Hidden Markov Model: a shortest unique representative approach to detect the protein toxins, virulence factors and antibiotic resistance genes

por Xie, Gary, Fair, Jeanne M.
Publicado 2021

Dynamic diversity of the tryptophan pathway in chlamydiae: reductive evolution and a novel operon for tryptophan recapture

por Xie, Gary, Bonner, Carol A, Jensen, Roy A
Publicado 2002

Significance of two distinct types of tryptophan synthase beta chain in Bacteria, Archaea and higher plants

por Xie, Gary, Forst, Christian, Bonner, Carol, Jensen, Roy A
Publicado 2002

Recruiting Human Microbiome Shotgun Data to Site-Specific Reference Genomes

por Xie, Gary, Lo, Chien-Chi, Scholz, Matthew, Chain, Patrick S. G.
Publicado 2014

Complete Genome Sequence of Veillonella atypica OK5, the First Transformable Strain in the Species

por Zhou, Peng, Xie, Gary, Li, Xiaoli, Liu, Jinman, Qi, Fengxia
Publicado 2017

The Redox-Sensing Regulator Rex Modulates Central Carbon Metabolism, Stress Tolerance Response and Biofilm Formation by Streptococcus mutans

por Bitoun, Jacob P., Liao, Sumei, Yao, Xin, Xie, Gary G., Wen, Zezhang T.
Publicado 2012

Inter-genomic displacement via lateral gene transfer of bacterial trp operons in an overall context of vertical genealogy

por Xie, Gary, Bonner, Carol A, Song, Jian, Keyhani, Nemat O, Jensen, Roy A
Publicado 2004

The emerging periplasm-localized subclass of AroQ chorismate mutases, exemplified by those from Salmonella typhimurium and Pseudomonas aeruginosa

por Calhoun, David H, Bonner, Carol A, Gu, Wei, Xie, Gary, Jensen, Roy A
Publicado 2001

Lateral gene transfer and ancient paralogy of operons containing redundant copies of tryptophan-pathway genes in Xylella species and in heterocystous cyanobacteria

por Xie, Gary, Bonner, Carol A, Brettin, Tom, Gottardo, Raphael, Keyhani, Nemat O, Jensen, Roy A
Publicado 2003

Biological Consequences of Ancient Gene Acquisition and Duplication in the Large Genome of Candidatus Solibacter usitatus Ellin6076

por Challacombe, Jean F., Eichorst, Stephanie A., Hauser, Loren, Land, Miriam, Xie, Gary, Kuske, Cheryl R.
Publicado 2011

Clostridium botulinum Strain Af84 Contains Three Neurotoxin Gene Clusters: Bont/A2, bont/F4 and bont/F5

por Dover, Nir, Barash, Jason R., Hill, Karen K., Davenport, Karen W., Teshima, Hazuki, Xie, Gary, Arnon, Stephen S.
Publicado 2013

Correction: Clostridium botulinum Strain Af84 Contains Three Neurotoxin Gene Clusters: Bont/A2, bont/F4 and bont/F5

por Dover, Nir, Barash, Jason R., Hill, Karen K., Davenport, Karen W., Teshima, Hazuki, Xie, Gary, Arnon, Stephen S.
Publicado 2013

Exception to the Rule: Genomic Characterization of Naturally Occurring Unusual Vibrio cholerae Strains with a Single Chromosome

por Xie, Gary, Johnson, Shannon L., Davenport, Karen W., Rajavel, Mathumathi, Waldminghaus, Torsten, Detter, John C., Chain, Patrick S., Sozhamannan, Shanmuga
Publicado 2017

Recombination and insertion events involving the botulinum neurotoxin complex genes in Clostridium botulinum types A, B, E and F and Clostridium butyricum type E strains

por Hill, Karen K, Xie, Gary, Foley, Brian T, Smith, Theresa J, Munk, Amy C, Bruce, David, Smith, Leonard A, Brettin, Thomas S, Detter, John C
Publicado 2009

Rapid phylogenetic and functional classification of short genomic fragments with signature peptides

por Berendzen, Joel, Bruno, William J, Cohn, Judith D, Hengartner, Nicolas W, Kuske, Cheryl R, McMahon, Benjamin H, Wolinsky, Murray A, Xie, Gary
Publicado 2012

Complete genome sequence of Arthrobacter sp. strain FB24

por Nakatsu, Cindy H., Barabote, Ravi, Thompson, Sue, Bruce, David, Detter, Chris, Brettin, Thomas, Han, Cliff, Beasley, Federico, Chen, Weimin, Konopka, Allan, Xie, Gary
Publicado 2013

Dynamics of Streptococcus mutans Transcriptome in Response to Starch and Sucrose during Biofilm Development

por Klein, Marlise I., DeBaz, Lena, Agidi, Senyo, Lee, Herbert, Xie, Gary, Lin, Amy H.-M., Hamaker, Bruce R., Lemos, José A., Koo, Hyun
Publicado 2010

Appendix Q: Recommendations for Developing Molecular Assays for Microbial Pathogen Detection Using Modern In Silico Approaches

por SantaLucia, John, Sozhamannan, Shanmuga, Gans, Jason D, Koehler, Jeffrey W, Soong, Ricky, Lin, Nancy J, Xie, Gary, Olson, Victoria, Roth, Kristian, Beck, Linda
Publicado 2020

Large Direct Repeats Flank Genomic Rearrangements between a New Clinical Isolate of Francisella tularensis subsp. tularensis A1 and Schu S4

por Nalbantoglu, Ufuk, Sayood, Khalid, Dempsey, Michael P., Iwen, Peter C., Francesconi, Stephen C., Barabote, Ravi D., Xie, Gary, Brettin, Thomas S., Hinrichs, Steven H., Fey, Paul D.
Publicado 2010

Genome Sequence of Porphyromonas gingivalis Strain A7436

por Chastain-Gross, Ryan P., Xie, Gary, Bélanger, Myriam, Kumar, Dibyendu, Whitlock, Joan A., Liu, Li, Farmerie, William G., Daligault, Hajnalka E., Han, Cliff S., Brettin, Thomas S., Progulske-Fox, Ann
Publicado 2015