An interaction-motif-based scoring function for protein-ligand docking

por Xie, Zhong-Ru, Hwang, Ming-Jing
Publicado 2010

Computational Modeling of the Interplay between Cadherin-Mediated Cell Adhesion and Wnt Signaling Pathway

por Chen, Jiawen, Xie, Zhong-Ru, Wu, Yinghao
Publicado 2014

Predicting Protein–protein Association Rates using Coarse-grained Simulation and Machine Learning

por Xie, Zhong-Ru, Chen, Jiawen, Wu, Yinghao
Publicado 2017

A Pilot Study of All-Computational Drug Design Protocol–From Structure Prediction to Interaction Analysis

por Wu, Yifei, Lou, Lei, Xie, Zhong-Ru
Publicado 2020

Decomposing the space of protein quaternary structures with the interface fragment pair library

por Xie, Zhong-Ru, Chen, Jiawen, Zhao, Yilin, Wu, Yinghao
Publicado 2015

Structural and Functional Enrichment Analyses for Antimicrobial Peptides

por Lo, Sheng C., Xie, Zhong-Ru, Chang, Kuan Y.
Publicado 2020

DeepDISE: DNA Binding Site Prediction Using a Deep Learning Method

por Hendrix, Samuel Godfrey, Chang, Kuan Y., Ryu, Zeezoo, Xie, Zhong-Ru
Publicado 2021

LISE: a server using ligand-interacting and site-enriched protein triangles for prediction of ligand-binding sites

por Xie, Zhong-Ru, Liu, Chuan-Kun, Hsiao, Fang-Chih, Yao, Adam, Hwang, Ming-Jing
Publicado 2013

In silico identification of drug candidates against COVID-19

por Wu, Yifei, Chang, Kuan Y., Lou, Lei, Edwards, Lorette G., Doma, Bly K., Xie, Zhong-Ru
Publicado 2020

Structural and spectroscopic characterization of RufO indicates a new biological role in rufomycin biosynthesis

por Jordan, Stephanie, Li, Bingnan, Traore, Ephrahime, Wu, Yifei, Usai, Remigio, Liu, Aimin, Xie, Zhong-Ru, Wang, Yifan
Publicado 2023

Engineering a PAM-flexible SpdCas9 variant as a universal gene repressor

por Wang, Jian, Teng, Yuxi, Zhang, Ruihua, Wu, Yifei, Lou, Lei, Zou, Yusong, Li, Michelle, Xie, Zhong-Ru, Yan, Yajun
Publicado 2021

Elucidating the Inhibitory Effect of Resveratrol and Its Structural Analogs on Selected Nucleotide-Related Enzymes

por Wu, Yifei, Hsieh, Tze-chen, Wu, Joseph M., Wang, Xiaoxiao, Christopher, Joshua S., Pham, Amanda H., Swaby, Justin David-Li, Lou, Lei, Xie, Zhong-Ru
Publicado 2020

Identifying Drug Candidates for COVID-19 with Large-Scale Drug Screening

por Wu, Yifei, Pegan, Scott D., Crich, David, Lou, Lei, Mullininx, Lauren Nicole, Starling, Edward B., Booth, Carson, Chishom, Andrew Edward, Chang, Kuan Y., Xie, Zhong-Ru
Publicado 2023

Polyphenols as alternative treatments of COVID-19

por Wu, Yifei, Pegan, Scott D., Crich, David, Desrochers, Ellison, Starling, Edward B., Hansen, Madelyn C., Booth, Carson, Nicole Mullininx, Lauren, Lou, Lei, Chang, Kuan Y., Xie, Zhong-Ru
Publicado 2021

Polyphenols as Potential Inhibitors of SARS-CoV-2 RNA Dependent RNA Polymerase (RdRp)

por Wu, Yifei, Crich, David, Pegan, Scott D., Lou, Lei, Hansen, Madelyn C., Booth, Carson, Desrochers, Ellison, Mullininx, Lauren Nicole, Starling, Edward B., Chang, Kuan Y., Xie, Zhong-Ru
Publicado 2021

Encapsulating Cas9 into extracellular vesicles by protein myristoylation

por Whitley, Joseph Andrew, Kim, Sungjin, Lou, Lei, Ye, Chenming, Alsaidan, Omar Awad, Sulejmani, Essilvo, Cai, Jingwen, Desrochers, Ellison Gerona, Beharry, Zanna, Rickman, Catherine Bowes, Klingeborn, Mikael, Liu, Yutao, Xie, Zhong‐Ru, Cai, Houjian
Publicado 2022

Pharmacological inhibition of noncanonical EED-EZH2 signaling overcomes chemoresistance in prostate cancer

por Li, Xin, Gera, Lajos, Zhang, Shumin, Chen, Yanhua, Lou, Lei, Wilson, Lauren Marie, Xie, Zhong-Ru, Sautto, Giuseppe, Liu, Degang, Danaher, Alira, Mamouni, Kenza, Yang, Yang, Du, Yuhong, Fu, Haian, Kucuk, Omer, Osunkoya, Adeboye O., Zhou, Jia, Wu, Daqing
Publicado 2021