SEQEL: a tool for biological sequence manipulation in Emacs

por Xu, Zhenjiang Zech, Lu, Hui
Publicado 2021

Editorial: Non-coding RNAs: insights and state-of-the-art in gastrointestinal sciences

por Fu, Ting, Xu, Zhenjiang Zech, Zhong, Cuncong
Publicado 2023

PM2RA: A Framework for Detecting and Quantifying Relationship Alterations in Microbial Community

por Liu, Zhi, Mi, Kai, Xu, Zhenjiang Zech, Zhang, Qiankun, Liu, Xingyin
Publicado 2021

Discovery of Novel ncRNA Sequences in Multiple Genome Alignments on the Basis of Conserved and Stable Secondary Structures

por Fu, Yinghan, Xu, Zhenjiang Zech, Lu, Zhi J., Zhao, Shan, Mathews, David H.
Publicado 2015

Tiny microbes, enormous impacts: what matters in gut microbiome studies?

por Debelius, Justine, Song, Se Jin, Vazquez-Baeza, Yoshiki, Xu, Zhenjiang Zech, Gonzalez, Antonio, Knight, Rob
Publicado 2016

Green Banana Flour Contributes to Gut Microbiota Recovery and Improves Colonic Barrier Integrity in Mice Following Antibiotic Perturbation

por Li, Ping, Li, Ming, Song, Ying, Huang, Xiaochang, Wu, Tao, Xu, Zhenjiang Zech, Lu, Hui
Publicado 2022

Meta-analysis reveals Helicobacter pylori mutual exclusivity and reproducible gastric microbiome alterations during gastric carcinoma progression

por Li, Yan, Hu, Yichen, Zhan, Xiang, Song, Ying, Xu, Meng, Wang, Shijie, Huang, Xiaochang, Xu, Zhenjiang Zech
Publicado 2023

Microbiome Data Accurately Predicts the Postmortem Interval Using Random Forest Regression Models

por Belk, Aeriel, Xu, Zhenjiang Zech, Carter, David O., Lynne, Aaron, Bucheli, Sibyl, Knight, Rob, Metcalf, Jessica L.
Publicado 2018

Systematic evaluation of antimicrobial food preservatives on glucose metabolism and gut microbiota in healthy mice

por Li, Ping, Li, Ming, Wu, Tao, Song, Ying, Li, Yan, Huang, Xiaochang, Lu, Hui, Xu, Zhenjiang Zech
Publicado 2022

Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies

por Song, Se Jin, Amir, Amnon, Metcalf, Jessica L., Amato, Katherine R., Xu, Zhenjiang Zech, Humphrey, Greg, Knight, Rob
Publicado 2016

Guiding longitudinal sampling in IBD cohorts

por Vázquez-Baeza, Yoshiki, Gonzalez, Antonio, Xu, Zhenjiang Zech, Washburne, Alex, Herfarth, Hans H, Sartor, R Balfour, Knight, Rob
Publicado 2018

Diurnal and eating-associated microbial patterns revealed via high-frequency saliva sampling

por Hu, Yichen, Amir, Amnon, Huang, Xiaochang, Li, Yan, Huang, Shi, Wolfe, Elaine, Weiss, Sophie, Knight, Rob, Xu, Zhenjiang Zech
Publicado 2022

Microbial effects of livestock manure fertilization on freshwater aquaculture ponds rearing tilapia (Oreochromis shiranus) and North African catfish (Clarias gariepinus)

por Minich, Jeremiah J., Zhu, Qiyun, Xu, Zhenjiang Zech, Amir, Amnon, Ngochera, Maxon, Simwaka, Moses, Allen, Eric E., Zidana, Hastings, Knight, Rob
Publicado 2018

Systematic Evaluation of the Viable Microbiome in the Human Oral and Gut Samples with Spike-in Gram+/– Bacteria

por Liu, Feng, Lu, Hui, Dong, Biao, Huang, Xiaochang, Cheng, Hongyu, Qu, Ru, Hu, Yichen, Zhong, Luyun, Guo, Zhenni, You, Yuehua, Xu, Zhenjiang Zech
Publicado 2023

Open-Source Sequence Clustering Methods Improve the State Of the Art

por Kopylova, Evguenia, Navas-Molina, Jose A., Mercier, Céline, Xu, Zhenjiang Zech, Mahé, Frédéric, He, Yan, Zhou, Hong-Wei, Rognes, Torbjørn, Caporaso, J. Gregory, Knight, Rob
Publicado 2016

Calour: an Interactive, Microbe-Centric Analysis Tool

por Xu, Zhenjiang Zech, Amir, Amnon, Sanders, Jon, Zhu, Qiyun, Morton, James T., Bletz, Molly C., Tripathi, Anupriya, Huang, Shi, McDonald, Daniel, Jiang, Lingjing, Knight, Rob
Publicado 2019

A Pilot Study of Microbial Succession in Human Rib Skeletal Remains during Terrestrial Decomposition

por Deel, Heather, Emmons, Alexandra L., Kiely, Jennifer, Damann, Franklin E., Carter, David O., Lynne, Aaron, Knight, Rob, Xu, Zhenjiang Zech, Bucheli, Sibyl, Metcalf, Jessica L.
Publicado 2021

Vitamin D metabolites and the gut microbiome in older men

por Thomas, Robert L., Jiang, Lingjing, Adams, John S., Xu, Zhenjiang Zech, Shen, Jian, Janssen, Stefan, Ackermann, Gail, Vanderschueren, Dirk, Pauwels, Steven, Knight, Rob, Orwoll, Eric S., Kado, Deborah M.
Publicado 2020

Gut microbiota from green tea polyphenol-dosed mice improves intestinal epithelial homeostasis and ameliorates experimental colitis

por Wu, Zhenhua, Huang, Shimeng, Li, Tiantian, Li, Na, Han, Dandan, Zhang, Bing, Xu, Zhenjiang Zech, Zhang, Shiyi, Pang, Jiaman, Wang, Shilan, Zhang, Guolong, Zhao, Jiangchao, Wang, Junjun
Publicado 2021

Normalization and microbial differential abundance strategies depend upon data characteristics

por Weiss, Sophie, Xu, Zhenjiang Zech, Peddada, Shyamal, Amir, Amnon, Bittinger, Kyle, Gonzalez, Antonio, Lozupone, Catherine, Zaneveld, Jesse R., Vázquez-Baeza, Yoshiki, Birmingham, Amanda, Hyde, Embriette R., Knight, Rob
Publicado 2017