Probabilistic model based on circular statistics for quantifying coverage depth dynamics originating from DNA replication

por Suzuki, Shinya, Yamada, Takuji
Publicado 2020

Extraction of phylogenetic network modules from the metabolic network

por Yamada, Takuji, Kanehisa, Minoru, Goto, Susumu
Publicado 2006

FuncTree2: an interactive radial tree for functional hierarchies and omics data visualization

por Darzi, Youssef, Yamate, Yuta, Yamada, Takuji
Publicado 2019

Significance of the gut microbiome in multistep colorectal carcinogenesis

por Mizutani, Sayaka, Yamada, Takuji, Yachida, Shinichi
Publicado 2020

iPath3.0: interactive pathways explorer v3

por Darzi, Youssef, Letunic, Ivica, Bork, Peer, Yamada, Takuji
Publicado 2018

Evolution of Aspergillus oryzae before and after domestication inferred by large-scale comparative genomic analysis

por Watarai, Naoki, Yamamoto, Nozomi, Sawada, Kazunori, Yamada, Takuji
Publicado 2019

The relationships between microbiota and the amino acids and organic acids in commercial vegetable pickle fermented in rice-bran beds

por Sawada, Kazunori, Koyano, Hitoshi, Yamamoto, Nozomi, Yamada, Takuji
Publicado 2021

The effects of vegetable pickling conditions on the dynamics of microbiota and metabolites

por Sawada, Kazunori, Koyano, Hitoshi, Yamamoto, Nozomi, Yamada, Takuji
Publicado 2021

Probiotic responder identification in cross-over trials for constipation using a Bayesian statistical model considering lags between intake and effect periods

por Hosoda, Shion, Nishimoto, Yuichiro, Yamauchi, Yohsuke, Yamada, Takuji, Hamada, Michiaki
Publicado 2023

iPath2.0: interactive pathway explorer

por Yamada, Takuji, Letunic, Ivica, Okuda, Shujiro, Kanehisa, Minoru, Bork, Peer
Publicado 2011

CLAST: CUDA implemented large-scale alignment search tool

por Yano, Masahiro, Mori, Hiroshi, Akiyama, Yutaka, Yamada, Takuji, Kurokawa, Ken
Publicado 2014

FuncTree: Functional Analysis and Visualization for Large-Scale Omics Data

por Uchiyama, Takeru, Irie, Mitsuru, Mori, Hiroshi, Kurokawa, Ken, Yamada, Takuji
Publicado 2015

VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing

por Mori, Hiroshi, Maruyama, Takayuki, Yano, Masahiro, Yamada, Takuji, Kurokawa, Ken
Publicado 2018

Targeted enzyme gene re-positioning: A computational approach for discovering alternative bacterial enzymes for the synthesis of plant-specific secondary metabolites

por Nakamura, Yuya, Hirose, Shuichi, Taniguchi, Yuko, Moriya, Yuki, Yamada, Takuji
Publicado 2019

Intrahepatic cholangiocarcinoma with gastric infiltration misdiagnosed as gastric submucosal tumor

por Ito, Shunichi, Takahashi, Yutaka, Yamada, Takuji, Kawai, Yosuke, Ohira, Kei
Publicado 2020

Xanthogranulomatous appendicitis with elevated tumor marker misdiagnosed as cecal cancer: a case report

por Ito, Shunichi, Takahashi, Yutaka, Yamada, Takuji, Kawai, Yosuke, Ohira, Kei
Publicado 2021

Toward molecular trait-based ecology through integration of biogeochemical, geographical and metagenomic data

por Raes, Jeroen, Letunic, Ivica, Yamada, Takuji, Jensen, Lars Juhl, Bork, Peer
Publicado 2011

Clustering under the line graph transformation: application to reaction network

por Nacher, Jose C, Ueda, Nobuhisa, Yamada, Takuji, Kanehisa, Minoru, Akutsu, Tatsuya
Publicado 2004

Gluconobacter dominates the gut microbiome of the Asian palm civet Paradoxurus hermaphroditus that produces kopi luwak

por Watanabe, Hikaru, Ng, Chong Han, Limviphuvadh, Vachiranee, Suzuki, Shinya, Yamada, Takuji
Publicado 2020

VisANT: data-integrating visual framework for biological networks and modules

por Hu, Zhenjun, Mellor, Joe, Wu, Jie, Yamada, Takuji, Holloway, Dustin, DeLisi, Charles
Publicado 2005