Machine learning methods for protein-protein binding affinity prediction in protein design

por Guo, Zhongliang, Yamaguchi, Rui
Publicado 2022

Exploring temporal transcription regulation structure of Aspergillus fumigatus in heat shock by state space model

por Do, Jin Hwan, Yamaguchi, Rui, Miyano, Satoru
Publicado 2009

Xprediction: Explainable EGFR-TKIs response prediction based on drug sensitivity specific gene networks

por Park, Heewon, Yamaguchi, Rui, Imoto, Seiya, Miyano, Satoru
Publicado 2022

Sequence-specific bias correction for RNA-seq data using recurrent neural networks

por Zhang, Yao-zhong, Yamaguchi, Rui, Imoto, Seiya, Miyano, Satoru
Publicado 2017

Enhancing breakpoint resolution with deep segmentation model: A general refinement method for read-depth based structural variant callers

por Zhang, Yao-zhong, Imoto, Seiya, Miyano, Satoru, Yamaguchi, Rui
Publicado 2021

Gene Set-Based Module Discovery Decodes cis-Regulatory Codes Governing Diverse Gene Expression across Human Multiple Tissues

por Niida, Atsushi, Imoto, Seiya, Yamaguchi, Rui, Nagasaki, Masao, Miyano, Satoru
Publicado 2010

Analysis of Questionnaire for Traditional Medicine and Development of Decision Support System

por Katayama, Kotoe, Yamaguchi, Rui, Imoto, Seiya, Watanabe, Kenji, Miyano, Satoru
Publicado 2014

Inference of Gene Regulatory Networks Incorporating Multi-Source Biological Knowledge via a State Space Model with L1 Regularization

por Hasegawa, Takanori, Yamaguchi, Rui, Nagasaki, Masao, Miyano, Satoru, Imoto, Seiya
Publicado 2014

Revealing phenotype-associated functional differences by genome-wide scan of ancient haplotype blocks

por Onuki, Ritsuko, Yamaguchi, Rui, Shibuya, Tetsuo, Kanehisa, Minoru, Goto, Susumu
Publicado 2017

Global gene network exploration based on explainable artificial intelligence approach

por Park, Heewon, Maruhashi, Koji, Yamaguchi, Rui, Imoto, Seiya, Miyano, Satoru
Publicado 2020

Correction: Global gene network exploration based on explainable artificial intelligence approach

por Park, Heewon, Maruhashi, Koji, Yamaguchi, Rui, Imoto, Seiya, Miyano, Satoru
Publicado 2021

Halcyon: an accurate basecaller exploiting an encoder–decoder model with monotonic attention

por Konishi, Hiroki, Yamaguchi, Rui, Yamaguchi, Kiyoshi, Furukawa, Yoichi, Imoto, Seiya
Publicado 2020

Genomic Signal Processing

por Dougherty, Edward R, Huang, Yufei, Kim, Seungchan, Cai, Xiaodong, Yamaguchi, Rui
Publicado 2009

Recursive regularization for inferring gene networks from time-course gene expression profiles

por Shimamura, Teppei, Imoto, Seiya, Yamaguchi, Rui, Fujita, André, Nagasaki, Masao, Miyano, Satoru
Publicado 2009

Does Twitter Trigger Bursts in Signature Collections?

por Yamaguchi, Rui, Imoto, Seiya, Kami, Masahiro, Watanabe, Kenji, Miyano, Satoru, Yuji, Koichiro
Publicado 2013

Cross-talk between the transcription factor Sp1 and C/EBPβ modulates TGFβ1 production to negatively regulate the expression of chemokine RANTES

por Sakamoto, Arisa, Yamaguchi, Rui, Yamaguchi, Reona, Narahara, Shinji, Sugiuchi, Hiroyuki, Yamaguchi, Yasuo
Publicado 2018

A Bayesian model integration for mutation calling through data partitioning

por Moriyama, Takuya, Imoto, Seiya, Hayashi, Shuto, Shiraishi, Yuichi, Miyano, Satoru, Yamaguchi, Rui
Publicado 2019

Computational gene network analysis reveals TNF-induced angiogenesis

por Ogami, Kentaro, Yamaguchi, Rui, Imoto, Seiya, Tamada, Yoshinori, Araki, Hiromitsu, Print, Cristin, Miyano, Satoru
Publicado 2012

Identifying regulational alterations in gene regulatory networks by state space representation of vector autoregressive models and variational annealing

por Kojima, Kaname, Imoto, Seiya, Yamaguchi, Rui, Fujita, André, Yamauchi, Mai, Gotoh, Noriko, Miyano, Satoru
Publicado 2012

Prescription of Kampo Drugs in the Japanese Health Care Insurance Program

por Katayama, Kotoe, Yoshino, Tetsuhiro, Munakata, Kaori, Yamaguchi, Rui, Imoto, Seiya, Miyano, Satoru, Watanabe, Kenji
Publicado 2013