A novel neural response algorithm for protein function prediction

por Yalamanchili, Hari Krishna, Xiao, Quan-Wu, Wang, Junwen
Publicado 2012

SpliceNet: recovering splicing isoform-specific differential gene networks from RNA-Seq data of normal and diseased samples

por Yalamanchili, Hari Krishna, Li, Zhaoyuan, Wang, Panwen, Wong, Maria P., Yao, Jianfeng, Wang, Junwen
Publicado 2014

PolyAMiner-Bulk: A Machine Learning Based Bioinformatics Algorithm to Infer and Decode Alternative Polyadenylation Dynamics from bulk RNA-seq data

por Jonnakuti, Venkata Soumith, Wagner, Eric J., Maletić-Savatić, Mirjana, Liu, Zhandong, Yalamanchili, Hari Krishna
Publicado 2023

PolyA-miner: accurate assessment of differential alternative poly-adenylation from 3′Seq data using vector projections and non-negative matrix factorization

por Yalamanchili, Hari Krishna, Alcott, Callison E, Ji, Ping, Wagner, Eric J, Zoghbi, Huda Y, Liu, Zhandong
Publicado 2020

Inference of Gene-Phenotype Associations via Protein-Protein Interaction and Orthology

por Wang, Panwen, Lai, Wing-Fu, Li, Mulin Jun, Xu, Feng, Yalamanchili, Hari Krishna, Lovell-Badge, Robin, Wang, Junwen
Publicado 2013

Apparent bias toward long gene misregulation in MeCP2 syndromes disappears after controlling for baseline variations

por Raman, Ayush T., Pohodich, Amy E., Wan, Ying-Wooi, Yalamanchili, Hari Krishna, Lowry, William E., Zoghbi, Huda Y., Liu, Zhandong
Publicado 2018

A Comprehensive and Integrative Approach to MeCP2 Disease Transcriptomics

por Trostle, Alexander J., Li, Lucian, Kim, Seon-Young, Wang, Jiasheng, Al-Ouran, Rami, Yalamanchili, Hari Krishna, Liu, Zhandong, Wan, Ying-Wooi
Publicado 2023

Forniceal deep brain stimulation induces gene expression and splicing changes that promote neurogenesis and plasticity

por Pohodich, Amy E, Yalamanchili, Hari, Raman, Ayush T, Wan, Ying-Wooi, Gundry, Michael, Hao, Shuang, Jin, Haijing, Tang, Jianrong, Liu, Zhandong, Zoghbi, Huda Y
Publicado 2018

Sex-specific epigenetic development in the mouse hypothalamic arcuate nucleus pinpoints human genomic regions associated with body mass index

por MacKay, Harry, Gunasekara, Chathura J., Yam, Kit-Yi, Srisai, Dollada, Yalamanchili, Hari Krishna, Li, Yumei, Chen, Rui, Coarfa, Cristian, Waterland, Robert A.
Publicado 2022

RBM17 Interacts with U2SURP and CHERP to Regulate Expression and Splicing of RNA-Processing Proteins

por De Maio, Antonia, Yalamanchili, Hari Krishna, Adamski, Carolyn J., Gennarino, Vincenzo A., Liu, Zhandong, Qin, Jun, Jung, Sung Y., Richman, Ronald, Orr, Harry, Zoghbi, Huda Y.
Publicado 2018

Integrated analysis of the aging brain transcriptome and proteome in tauopathy

por Mangleburg, Carl Grant, Wu, Timothy, Yalamanchili, Hari K., Guo, Caiwei, Hsieh, Yi-Chen, Duong, Duc M., Dammer, Eric B., De Jager, Philip L., Seyfried, Nicholas T., Liu, Zhandong, Shulman, Joshua M.
Publicado 2020

Transcriptional Regulation by ATOH1 and its Target SPDEF in the Intestine

por Lo, Yuan-Hung, Chung, Eunah, Li, Zhaohui, Wan, Ying-Wooi, Mahe, Maxime M., Chen, Min-Shan, Noah, Taeko K., Bell, Kristin N., Yalamanchili, Hari Krishna, Klisch, Tiemo J., Liu, Zhandong, Park, Joo-Seop, Shroyer, Noah F.
Publicado 2016

Tau-Mediated Disruption of the Spliceosome Triggers Cryptic RNA Splicing and Neurodegeneration in Alzheimer’s Disease

por Hsieh, Yi-Chen, Guo, Caiwei, Yalamanchili, Hari K., Abreha, Measho, Al-Ouran, Rami, Li, Yarong, Dammer, Eric B., Lah, James J., Levey, Allan I., Bennett, David A., De Jager, Philip L., Seyfried, Nicholas T., Liu, Zhandong, Shulman, Joshua M.
Publicado 2019

Partial loss of CFIm25 causes learning deficits and aberrant neuronal alternative polyadenylation

por Alcott, Callison E, Yalamanchili, Hari Krishna, Ji, Ping, van der Heijden, Meike E, Saltzman, Alexander, Elrod, Nathan, Lin, Ai, Leng, Mei, Bhatt, Bhoomi, Hao, Shuang, Wang, Qi, Saliba, Afaf, Tang, Jianrong, Malovannaya, Anna, Wagner, Eric J, Liu, Zhandong, Zoghbi, Huda Y
Publicado 2020

NCOR1/2 loss of function impairs memory through a novel GABAergic hypothalamus–CA3 projection

por Zhou, Wenjun, He, Yanlin, Rehman, Atteeq U., Kong, Yan, Hong, Sungguan, Ding, Guolian, Yalamanchili, Hari Krishna, Wan, Ying-Wooi, Paul, Basil, Wang, Chuhan, Gong, Yingyun, Zhou, Wenxian, Liu, Hao, Dean, John, Scalais, Emmanuel, O’Driscoll, Mary, Morton, Jenny E.V., Hou, Xinguo, Wu, Qi, Tong, Qingchun, Liu, Zhandong, Liu, Pengfei, Xu, Yong, Sun, Zheng
Publicado 2019

Disruption of MeCP2–TCF20 complex underlies distinct neurodevelopmental disorders

por Zhou, Jian, Hamdan, Hamdan, Yalamanchili, Hari Krishna, Pang, Kaifang, Pohodich, Amy E., Lopez, Joanna, Shao, Yingyao, Oses-Prieto, Juan A., Li, Lifang, Kim, Wonho, Durham, Mark A., Bajikar, Sameer S., Palmer, Donna J., Ng, Philip, Thompson, Michelle L., Bebin, E. Martina, Müller, Amelie J., Kuechler, Alma, Kampmeier, Antje, Haack, Tobias B., Burlingame, Alma L., Liu, Zhandong, Rasband, Matthew N., Zoghbi, Huda Y.
Publicado 2022

Alternative polyadenylation alters protein dosage by switching between intronic and 3′UTR sites

por de Prisco, Nicola, Ford, Caitlin, Elrod, Nathan D., Lee, Winston, Tang, Lauren C., Huang, Kai-Lieh, Lin, Ai, Ji, Ping, Jonnakuti, Venkata S., Boyle, Lia, Cabaj, Maximilian, Botta, Salvatore, Õunap, Katrin, Reinson, Karit, Wojcik, Monica H., Rosenfeld, Jill A., Bi, Weimin, Tveten, Kristian, Prescott, Trine, Gerstner, Thorsten, Schroeder, Audrey, Fong, Chin-To, George-Abraham, Jaya K., Buchanan, Catherine A., Hanson-Khan, Andrea, Bernstein, Jonathan A., Nella, Aikaterini A., Chung, Wendy K., Brandt, Vicky, Jovanovic, Marko, Targoff, Kimara L., Yalamanchili, Hari Krishna, Wagner, Eric J., Gennarino, Vincenzo A.
Publicado 2023