Testing gene set enrichment for subset of genes: Sub-GSE

por Yan, Xiting, Sun, Fengzhu
Publicado 2008

Toward a Cell Atlas of the Human Airway

por Schupp, Jonas Christian, Yan, Xiting, Kaminski, Naftali
Publicado 2020

Inferring activity changes of transcription factors by binding association with sorted expression profiles

por Cheng, Chao, Yan, Xiting, Sun, Fengzhu, Li, Lei M
Publicado 2007

G2S3: A gene graph-based imputation method for single-cell RNA sequencing data

por Wu, Weimiao, Liu, Yunqing, Dai, Qile, Yan, Xiting, Wang, Zuoheng
Publicado 2021

On optimal pooling designs to identify rare variants through massive resequencing

por Lee, Joon Sang, Choi, Murim, Yan, Xiting, Lifton, Richard P, Zhao, Hongyu
Publicado 2011

Openness weighted association studies: leveraging personal genome information to prioritize non-coding variants

por Song, Shuang, Shan, Nayang, Wang, Geng, Yan, Xiting, Liu, Jun S, Hou, Lin
Publicado 2021

Detecting functional rare variants by collapsing and incorporating functional annotation in Genetic Analysis Workshop 17 mini-exome data

por Yan, Xiting, Li, Lun, Lee, Joon Sang, Zheng, Wei, Ferguson, John, Zhao, Hongyu
Publicado 2011

Use of Bayesian networks to dissect the complexity of genetic disease: application to the Genetic Analysis Workshop 17 simulated data

por Kang, Jia, Zheng, Wei, Li, Lun, Lee, Joon Sang, Yan, Xiting, Zhao, Hongyu
Publicado 2011

A novel pathway-based distance score enhances assessment of disease heterogeneity in gene expression

por Yan, Xiting, Liang, Anqi, Gomez, Jose, Cohn, Lauren, Zhao, Hongyu, Chupp, Geoffrey L.
Publicado 2017

Latent-space embedding of expression data identifies gene signatures from sputum samples of asthmatic patients

por Lou, Shaoke, Li, Tianxiao, Spakowicz, Daniel, Yan, Xiting, Chupp, Geoffrey Lowell, Gerstein, Mark
Publicado 2020

Collapsing-based and kernel-based single-gene analyses applied to Genetic Analysis Workshop 17 mini-exome data

por Li, Lun, Zheng, Wei, Lee, Joon Sang, Zhang, Xianghua, Ferguson, John, Yan, Xiting, Zhao, Hongyu
Publicado 2011

Interplay of tRNA-Derived Fragments and T Cell Activation in Breast Cancer Patient Survival

por Shan, Nayang, Li, Ningshan, Dai, Qile, Hou, Lin, Yan, Xiting, Amei, Amei, Lu, Lingeng, Wang, Zuoheng
Publicado 2020

Noninvasive determinants of pulmonary hypertension in interstitial lung disease

por Joseph, Phillip, Savarimuthu, Stella, Zhao, Jiayi, Yan, Xiting, Oakland, Hannah T., Cullinan, Marjorie, Heerdt, Paul M., Singh, Inderjit
Publicado 2023

Large-scale risk prediction applied to Genetic Analysis Workshop 17 mini-exome sequence data

por Li, Gengxin, Ferguson, John, Zheng, Wei, Lee, Joon Sang, Zhang, Xianghua, Li, Lun, Kang, Jia, Yan, Xiting, Zhao, Hongyu
Publicado 2011

Genomic Androgen Receptor-Occupied Regions with Different Functions, Defined by Histone Acetylation, Coregulators and Transcriptional Capacity

por Jia, Li, Berman, Benjamin P., Jariwala, Unnati, Yan, Xiting, Cogan, Jon P., Walters, Allison, Chen, Ting, Buchanan, Grant, Frenkel, Baruch, Coetzee, Gerhard A.
Publicado 2008

Integrated Analysis of Tracheobronchial Fluid from Before and After Cardiopulmonary Bypass Reveals Activation of the Integrated Stress Response and Altered Pulmonary Microvascular...

por Habet, Victoria, Li, Ningshan, Qi, Ji, Peng, Gang, Charkoftaki, Georgia, Vasiliou, Vasilis, Sharma, Lokesh, Pober, Jordan S., Dela Cruz, Charles, Yan, Xiting, Pierce, Richard W.
Publicado 2023

Metagenomic sequencing of the bronchoalveolar lavage extracellular virome and cellular transcriptome of sarcoidosis patients does not detect rubella virus

por Keeler, Emma L., Vukmirovic, Milica, Yan, Xiting, Gulino, Kristin, Ghedin, Elodie, Kaminski, Naftali, Sullivan, Kathleen E., Bushman, Frederic D., Collman, Ronald G., Rosenbach, Misha
Publicado 2022

iDESC: identifying differential expression in single-cell RNA sequencing data with multiple subjects

por Liu, Yunqing, Zhao, Jiayi, Adams, Taylor S., Wang, Ningya, Schupp, Jonas C., Wu, Weimiao, McDonough, John E., Chupp, Geoffrey L., Kaminski, Naftali, Wang, Zuoheng, Yan, Xiting
Publicado 2023

Correction: iDESC: identifying differential expression in single-cell RNA sequencing data with multiple subjects

por Liu, Yunqing, Zhao, Jiayi, Adams, Taylor S., Wang, Ningya, Schupp, Jonas C., Wu, Weimiao, McDonough, John E., Chupp, Geoffrey L., Kaminski, Naftali, Wang, Zuoheng, Yan, Xiting
Publicado 2023

Approaches for integrating heterogeneous RNA-seq data reveal cross-talk between microbes and genes in asthmatic patients

por Spakowicz, Daniel, Lou, Shaoke, Barron, Brian, Gomez, Jose L., Li, Tianxiao, Liu, Qing, Grant, Nicole, Yan, Xiting, Hoyd, Rebecca, Weinstock, George, Chupp, Geoffrey L., Gerstein, Mark
Publicado 2020