Solving Generalized Polyomino Puzzles Using the Ising Model

por Takabatake, Kazuki, Yanagisawa, Keisuke, Akiyama, Yutaka
Publicado 2022

Inverse Mixed-Solvent Molecular Dynamics for Visualization of the Residue Interaction Profile of Molecular Probes

por Yanagisawa, Keisuke, Yoshino, Ryunosuke, Kudo, Genki, Hirokawa, Takatsugu
Publicado 2022

MEGADOCK-Web: an integrated database of high-throughput structure-based protein-protein interaction predictions

por Hayashi, Takanori, Matsuzaki, Yuri, Yanagisawa, Keisuke, Ohue, Masahito, Akiyama, Yutaka
Publicado 2018

Plasma protein binding prediction focusing on residue-level features and circularity of cyclic peptides by deep learning

por Li, Jianan, Yanagisawa, Keisuke, Yoshikawa, Yasushi, Ohue, Masahito, Akiyama, Yutaka
Publicado 2021

Effective Protein–Ligand Docking Strategy via Fragment Reuse and a Proof-of-Concept Implementation

por Yanagisawa, Keisuke, Kubota, Rikuto, Yoshikawa, Yasushi, Ohue, Masahito, Akiyama, Yutaka
Publicado 2022

Lipid Composition Is Critical for Accurate Membrane Permeability Prediction of Cyclic Peptides by Molecular Dynamics Simulations

por Sugita, Masatake, Fujie, Takuya, Yanagisawa, Keisuke, Ohue, Masahito, Akiyama, Yutaka
Publicado 2022

QEX: target-specific druglikeness filter enhances ligand-based virtual screening

por Mochizuki, Masahiro, Suzuki, Shogo D., Yanagisawa, Keisuke, Ohue, Masahito, Akiyama, Yutaka
Publicado 2018

CycPeptMPDB: A Comprehensive Database of Membrane Permeability of Cyclic Peptides

por Li, Jianan, Yanagisawa, Keisuke, Sugita, Masatake, Fujie, Takuya, Ohue, Masahito, Akiyama, Yutaka
Publicado 2023

Computational prediction of plasma protein binding of cyclic peptides from small molecule experimental data using sparse modeling techniques

por Tajimi, Takashi, Wakui, Naoki, Yanagisawa, Keisuke, Yoshikawa, Yasushi, Ohue, Masahito, Akiyama, Yutaka
Publicado 2018

Improved Large-Scale Homology Search by Two-Step Seed Search Using Multiple Reduced Amino Acid Alphabets

por Takabatake, Kazuki, Izawa, Kazuki, Akikawa, Motohiro, Yanagisawa, Keisuke, Ohue, Masahito, Akiyama, Yutaka
Publicado 2021

Spresso: an ultrafast compound pre-screening method based on compound decomposition

por Yanagisawa, Keisuke, Komine, Shunta, Suzuki, Shogo D, Ohue, Masahito, Ishida, Takashi, Akiyama, Yutaka
Publicado 2017

Identification of potential inhibitors based on compound proposal contest: Tyrosine-protein kinase Yes as a target

por Chiba, Shuntaro, Ikeda, Kazuyoshi, Ishida, Takashi, Gromiha, M. Michael, Taguchi, Y-h., Iwadate, Mitsuo, Umeyama, Hideaki, Hsin, Kun-Yi, Kitano, Hiroaki, Yamamoto, Kazuki, Sugaya, Nobuyoshi, Kato, Koya, Okuno, Tatsuya, Chikenji, George, Mochizuki, Masahiro, Yasuo, Nobuaki, Yoshino, Ryunosuke, Yanagisawa, Keisuke, Ban, Tomohiro, Teramoto, Reiji, Ramakrishnan, Chandrasekaran, Thangakani, A. Mary, Velmurugan, D., Prathipati, Philip, Ito, Junichi, Tsuchiya, Yuko, Mizuguchi, Kenji, Honma, Teruki, Hirokawa, Takatsugu, Akiyama, Yutaka, Sekijima, Masakazu
Publicado 2015

An iterative compound screening contest method for identifying target protein inhibitors using the tyrosine-protein kinase Yes

por Chiba, Shuntaro, Ishida, Takashi, Ikeda, Kazuyoshi, Mochizuki, Masahiro, Teramoto, Reiji, Taguchi, Y-h., Iwadate, Mitsuo, Umeyama, Hideaki, Ramakrishnan, Chandrasekaran, Thangakani, A. Mary, Velmurugan, D., Gromiha, M. Michael, Okuno, Tatsuya, Kato, Koya, Minami, Shintaro, Chikenji, George, Suzuki, Shogo D., Yanagisawa, Keisuke, Shin, Woong-Hee, Kihara, Daisuke, Yamamoto, Kazuki Z., Moriwaki, Yoshitaka, Yasuo, Nobuaki, Yoshino, Ryunosuke, Zozulya, Sergey, Borysko, Petro, Stavniichuk, Roman, Honma, Teruki, Hirokawa, Takatsugu, Akiyama, Yutaka, Sekijima, Masakazu
Publicado 2017