Benchmarking clustering algorithms on estimating the number of cell types from single-cell RNA-sequencing data

por Yu, Lijia, Cao, Yue, Yang, Jean Y. H., Yang, Pengyi
Publicado 2022

scREMOTE: Using multimodal single cell data to predict regulatory gene relationships and to build a computational cell reprogramming model

por Tran, Andy, Yang, Pengyi, Yang, Jean Y H, Ormerod, John T
Publicado 2022

Computational approaches for direct cell reprogramming: from the bulk omics era to the single cell era

por Tran, Andy, Yang, Pengyi, Yang, Jean Y H, Ormerod, John
Publicado 2022

Differential distribution improves gene selection stability and has competitive classification performance for patient survival

por Strbenac, Dario, Mann, Graham J., Yang, Jean Y.H., Ormerod, John T.
Publicado 2016

Atlas-scale single-cell multi-sample multi-condition data integration using scMerge2

por Lin, Yingxin, Cao, Yue, Willie, Elijah, Patrick, Ellis, Yang, Jean Y. H.
Publicado 2023

SurvBenchmark: comprehensive benchmarking study of survival analysis methods using both omics data and clinical data

por Zhang, Yunwei, Wong, Germaine, Mann, Graham, Muller, Samuel, Yang, Jean Y H
Publicado 2022

Integrated single cell data analysis reveals cell specific networks and novel coactivation markers

por Ghazanfar, Shila, Bisogni, Adam J., Ormerod, John T., Lin, David M., Yang, Jean Y. H.
Publicado 2016

scDC: single cell differential composition analysis

por Cao, Yue, Lin, Yingxin, Ormerod, John T., Yang, Pengyi, Yang, Jean Y.H., Lo, Kitty K.
Publicado 2019

Autoencoder-based cluster ensembles for single-cell RNA-seq data analysis

por Geddes, Thomas A., Kim, Taiyun, Nan, Lihao, Burchfield, James G., Yang, Jean Y. H., Tao, Dacheng, Yang, Pengyi
Publicado 2019

NEMoE: a nutrition aware regularized mixture of experts model to identify heterogeneous diet-microbiome-host health interactions

por Xu, Xiangnan, Lubomski, Michal, Holmes, Andrew J., Sue, Carolyn M., Davis, Ryan L., Muller, Samuel, Yang, Jean Y. H.
Publicado 2023

Overcoming cohort heterogeneity for the prediction of subclinical cardiovascular disease risk

por Chan, Adam S., Wu, Songhua, Vernon, Stephen T., Tang, Owen, Figtree, Gemma A., Liu, Tongliang, Yang, Jean Y.H., Patrick, Ellis
Publicado 2023

A multi-step classifier addressing cohort heterogeneity improves performance of prognostic biomarkers in three cancer types

por Patrick, Ellis, Schramm, Sarah-Jane, Ormerod, John T, Scolyer, Richard A, Mann, Graham J, Mueller, Samuel, Yang, Jean Y.H.
Publicado 2016

Nutritional Intake and Gut Microbiome Composition Predict Parkinson’s Disease

por Lubomski, Michal, Xu, Xiangnan, Holmes, Andrew J., Muller, Samuel, Yang, Jean Y. H., Davis, Ryan L., Sue, Carolyn M.
Publicado 2022

The Gut Microbiome in Parkinson’s Disease: A Longitudinal Study of the Impacts on Disease Progression and the Use of Device-Assisted Therapies

por Lubomski, Michal, Xu, Xiangnan, Holmes, Andrew J., Muller, Samuel, Yang, Jean Y. H., Davis, Ryan L., Sue, Carolyn M.
Publicado 2022

Scalable workflow for characterization of cell-cell communication in COVID-19 patients

por Lin, Yingxin, Loo, Lipin, Tran, Andy, Lin, David M., Moreno, Cesar, Hesselson, Daniel, Neely, G. Gregory, Yang, Jean Y. H.
Publicado 2022

Evaluating stably expressed genes in single cells

por Lin, Yingxin, Ghazanfar, Shila, Strbenac, Dario, Wang, Andy, Patrick, Ellis, Lin, David M, Speed, Terence, Yang, Jean Y H, Yang, Pengyi
Publicado 2019

LC-N2G: a local consistency approach for nutrigenomics data analysis

por Xu, Xiangnan, Solon-Biet, Samantha M., Senior, Alistair, Raubenheimer, David, Simpson, Stephen J., Fontana, Luigi, Mueller, Samuel, Yang, Jean Y. H.
Publicado 2020

scTIE: data integration and inference of gene regulation using single-cell temporal multimodal data

por Lin, Yingxin, Wu, Tung-Yu, Chen, Xi, Wan, Sheng, Chao, Brian, Xin, Jingxue, Yang, Jean Y.H., Wong, Wing H., Wang, Y. X. Rachel
Publicado 2023

Gene expression allelic imbalance in ovine brown adipose tissue impacts energy homeostasis

por Ghazanfar, Shila, Vuocolo, Tony, Morrison, Janna L., Nicholas, Lisa M., McMillen, Isabella C., Yang, Jean Y. H., Buckley, Michael J., Tellam, Ross L.
Publicado 2017

Viral Integration Plays a Minor Role in the Development and Prognostication of Oral Squamous Cell Carcinoma

por Satgunaseelan, Laveniya, Strbenac, Dario, Tadi, Sahithi, Nguyen, Kevin, Wykes, James, Palme, Carsten E., Low, Tsu-Hui (Hubert), Yang, Jean Y. H., Clark, Jonathan R., Gupta, Ruta
Publicado 2022