Sparc: a sparsity-based consensus algorithm for long erroneous sequencing reads

por Ye, Chengxi, Ma, Zhanshan (Sam)
Publicado 2016

BlindCall: ultra-fast base-calling of high-throughput sequencing data by blind deconvolution

por Ye, Chengxi, Hsiao, Chiaowen, Corrada Bravo, Héctor
Publicado 2014

DBG2OLC: Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies

por Ye, Chengxi, Hill, Christopher M., Wu, Shigang, Ruan, Jue, Ma, Zhanshan (Sam)
Publicado 2016

Exploiting sparseness in de novo genome assembly

por Ye, Chengxi, Ma, Zhanshan Sam, Cannon, Charles H, Pop, Mihai, Yu, Douglas W
Publicado 2012

Network analysis suggests a potentially ‘evil' alliance of opportunistic pathogens inhibited by a cooperative network in human milk bacterial communities

por (Sam) Ma, Zhanshan, Guan, Qiong, Ye, Chengxi, Zhang, Chengchen, Foster, James A., Forney, Larry J.
Publicado 2015

Strategies for Controlling or Releasing the Influence Due to the Volume Expansion of Silicon inside Si−C Composite Anode for High-Performance Lithium-Ion Batteries

por Zhang, Xian, Weng, Jingzheng, Ye, Chengxi, Liu, Mengru, Wang, Chenyu, Wu, Shuru, Tong, Qingsong, Zhu, Mengqi, Gao, Feng
Publicado 2022

The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution

por Smith, Jeramiah J., Timoshevskaya, Nataliya, Ye, Chengxi, Holt, Carson, Keinath, Melissa C., Parker, Hugo J., Cook, Malcolm E., Hess, Jon E., Narum, Shawn R., Lamanna, Francesco, Kaessmann, Henrik, Timoshevskiy, Vladimir A., Waterbury, Courtney K. M., Saraceno, Cody, Wiedemann, Leanne M., Robb, Sofia M. C., Baker, Carl, Eichler, Evan E., Hockman, Dorit, Sauka-Spengler, Tatjana, Yandell, Mark, Krumlauf, Robb, Elgar, Greg, Amemiya, Chris T.
Publicado 2018

From asymmetrical to balanced genomic diversification during rediploidization: Subgenomic evolution in allotetraploid fish

por Luo, Jing, Chai, Jing, Wen, Yanling, Tao, Min, Lin, Guoliang, Liu, Xiaochuan, Ren, Li, Chen, Zeyu, Wu, Shigang, Li, Shengnan, Wang, Yude, Qin, Qinbo, Wang, Shi, Gao, Yun, Huang, Feng, Wang, Lu, Ai, Cheng, Wang, Xiaobo, Li, Lianwei, Ye, Chengxi, Yang, Huimin, Luo, Mi, Chen, Jie, Hu, Hong, Yuan, Liujiao, Zhong, Li, Wang, Jing, Xu, Jian, Du, Zhenglin, Ma, Zhanshan (Sam), Murphy, Robert W., Meyer, Axel, Gui, Jianfang, Xu, Peng, Ruan, Jue, Chen, Z. Jeffrey, Liu, Shaojun, Lu, Xuemei, Zhang, Ya-ping
Publicado 2020