ScaffComb: A Phenotype‐Based Framework for Drug Combination Virtual Screening in Large‐Scale Chemical Datasets

por Ye, Zhaofeng, Chen, Fengling, Zeng, Jiangyang, Gao, Juntao, Zhang, Michael Q.
Publicado 2021

Development of a 32-gene signature using machine learning for accurate prediction of inflammatory bowel disease

por Yu, Shicheng, Zhang, Mengxian, Ye, Zhaofeng, Wang, Yalong, Wang, Xu, Chen, Ye-Guang
Publicado 2023

A mutation-induced drug resistance database (MdrDB)

por Yang, Ziyi, Ye, Zhaofeng, Qiu, Jiezhong, Feng, Rongjun, Li, Danyu, Hsieh, Changyu, Allcock, Jonathan, Zhang, Shengyu
Publicado 2023

MarkovHC: Markov hierarchical clustering for the topological structure of high-dimensional single-cell omics data with transition pathway and critical point detection

por Wang, Zhenyi, Zhong, Yanjie, Ye, Zhaofeng, Zeng, Lang, Chen, Yang, Shi, Minglei, Yuan, Zhiyuan, Zhou, Qiming, Qian, Minping, Zhang, Michael Q
Publicado 2021

Symmetry breaking during homodimeric assembly activates an E3 ubiquitin ligase

por Ye, Zhaofeng, Needham, Patrick G., Estabrooks, Samuel K., Whitaker, Susan K., Garcia, Brandon L., Misra, Saurav, Brodsky, Jeffrey L., Camacho, Carlos J.
Publicado 2017

Predicting protein targets for drug-like compounds using transcriptomics

por Pabon, Nicolas A., Xia, Yan, Estabrooks, Samuel K., Ye, Zhaofeng, Herbrand, Amanda K., Süß, Evelyn, Biondi, Ricardo M., Assimon, Victoria A., Gestwicki, Jason E., Brodsky, Jeffrey L., Camacho, Carlos J., Bar-Joseph, Ziv
Publicado 2018

MetalProGNet: a structure-based deep graph model for metalloprotein–ligand interaction predictions

por Jiang, Dejun, Ye, Zhaofeng, Hsieh, Chang-Yu, Yang, Ziyi, Zhang, Xujun, Kang, Yu, Du, Hongyan, Wu, Zhenxing, Wang, Jike, Zeng, Yundian, Zhang, Haotian, Wang, Xiaorui, Wang, Mingyang, Yao, Xiaojun, Zhang, Shengyu, Wu, Jian, Hou, Tingjun
Publicado 2023

A specific inhibitor of ALDH1A3 regulates retinoic acid biosynthesis in glioma stem cells

por Li, Jianfeng, Garavaglia, Silvia, Ye, Zhaofeng, Moretti, Andrea, Belyaeva, Olga V., Beiser, Alison, Ibrahim, Md, Wilk, Anna, McClellan, Steve, Klyuyeva, Alla V., Goggans, Kelli R., Kedishvili, Natalia Y., Salter, E. Alan, Wierzbicki, Andrzej, Migaud, Marie E., Mullett, Steven J., Yates, Nathan A., Camacho, Carlos J., Rizzi, Menico, Sobol, Robert W.
Publicado 2021