RBP-Maps enables robust generation of splicing regulatory maps

por Yee, Brian A., Pratt, Gabriel A., Graveley, Brenton R., Van Nostrand, Eric L., Yeo, Gene W.
Publicado 2019

The Thermus thermophilus DEAD-box protein Hera is a general RNA binding protein and plays a key role in tRNA metabolism

por Donsbach, Pascal, Yee, Brian A., Sanchez-Hevia, Dione, Berenguer, José, Aigner, Stefan, Yeo, Gene W., Klostermeier, Dagmar
Publicado 2020

fSHAPE, fSHAPE-eCLIP, and SHAPE-eCLIP probe transcript regions that interact with specific proteins

por Corley, Meredith, Flynn, Ryan A., Blue, Steven M., Yee, Brian A., Chang, Howard Y., Yeo, Gene W.
Publicado 2021

Crosstalk between CRISPR-Cas9 and the human transcriptome

por Smargon, Aaron A., Madrigal, Assael A., Yee, Brian A., Dong, Kevin D., Mueller, Jasmine R., Yeo, Gene W.
Publicado 2022

Short Poly(A) Tails are a Conserved Feature of Highly Expressed Genes

por Lima, Sarah Azoubel, Chipman, Laura B., Nicholson, Angela L., Chen, Ying-Hsin, Yee, Brian A., Yeo, Gene W., Coller, Jeff, Pasquinelli, Amy E.
Publicado 2017

The C. elegans neural editome reveals an ADAR target mRNA required for proper chemotaxis

por Deffit, Sarah N, Yee, Brian A, Manning, Aidan C, Rajendren, Suba, Vadlamani, Pranathi, Wheeler, Emily C, Domissy, Alain, Washburn, Michael C, Yeo, Gene W, Hundley, Heather A
Publicado 2017

Robust single-cell discovery of RNA targets of RNA binding proteins and ribosomes

por Brannan, Kristopher W., Chaim, Isaac A., Marina, Ryan J., Yee, Brian A., Kofman, Eric R., Lorenz, Daniel A., Jagannatha, Pratibha, Dong, Kevin D., Madrigal, Assael A., Underwood, Jason G., Yeo, Gene W.
Publicado 2021

Multiplexed transcriptome discovery of RNA-binding protein binding sites by antibody-barcode eCLIP

por Lorenz, Daniel A., Her, Hsuan-Lin, Shen, Kylie A., Rothamel, Katie, Hutt, Kasey R., Nojadera, Allan C., Bruns, Stephanie C., Manakov, Sergei A., Yee, Brian A., Chapman, Karen B., Yeo, Gene W.
Publicado 2022

Seryl-tRNA synthetase promotes translational readthrough by mRNA binding and involvement of the selenocysteine incorporation machinery

por Liu, Ze, Wang, Justin, Shi, Yi, Yee, Brian A, Terrey, Markus, Zhang, Qian, Lee, Jenq-Chang, Lin, Kuo-I, Wang, Andrew H-J, Ackerman, Susan L, Yeo, Gene W, Cui, Haissi, Yang, Xiang-Lei
Publicado 2023

RNA binding protein DDX5 restricts RORγt(+) T(reg) suppressor function to promote intestine inflammation

por Ma, Shengyun, Yang, Qiyuan, Chen, Nicholas, Zheng, Anna, Abbasi, Nazia, Wang, Gaowei, Patel, Parth R., Cho, Benjamin S., Yee, Brian A., Zhang, Lunfeng, Chu, Hiutung, Evans, Sylvia M., Yeo, Gene W., Zheng, Ye, Huang, Wendy Jia Men
Publicado 2023

DDX5 promotes oncogene C3 and FABP1 expressions and drives intestinal inflammation and tumorigenesis

por Abbasi, Nazia, Long, Tianyun, Li, Yuxin, Yee, Brian A, Cho, Benjamin S, Hernandez, Juan E, Ma, Evelyn, Patel, Parth R, Sahoo, Debashis, Sayed, Ibrahim M, Varki, Nissi, Das, Soumita, Ghosh, Pradipta, Yeo, Gene W, Huang, Wendy Jia Men
Publicado 2020

Pyruvate Kinase M (PKM) binds ribosomes in a poly-ADP ribosylation dependent manner to induce translational stalling

por Kejiou, Nevraj S, Ilan, Lena, Aigner, Stefan, Luo, Enching, Tonn, Tori, Ozadam, Hakan, Lee, Muyoung, Cole, Gregory B, Rabano, Ines, Rajakulendran, Nishani, Yee, Brian A, Najafabadi, Hamed S, Moraes, Trevor F, Angers, Stephane, Yeo, Gene W, Cenik, Can, Palazzo, Alexander F
Publicado 2023

A phage nucleus-associated RNA-binding protein is required for jumbo phage infection

por Enustun, Eray, Armbruster, Emily G., Lee, Jina, Zhang, Sitao, Yee, Brian A., Gu, Yajie, Deep, Amar, Naritomi, Jack T., Liang, Qishan, Aigner, Stefan, Adler, Benjamin A., Cress, Brady F., Doudna, Jennifer A., Chaikeeratisak, Vorrapon, Cleveland, Don W., Ghassemian, Majid, Yeo, Gene W., Pogliano, Joe, Corbett, Kevin D.
Publicado 2023

RNA binding protein CPEB1 remodels host and viral RNA landscapes

por Batra, Ranjan, Stark, Thomas J., Clark, Alex E., Belzile, Jean-Philippe, Wheeler, Emily C., Yee, Brian A., Huang, Hui, Gelboin-Burkhart, Chelsea, Huelga, Stephanie C., Aigner, Stefan, Roberts, Brett T., Bos, Tomas J., Sathe, Shashank, Donohue, John Paul, Rigo, Frank, Ares, Manuel, Spector, Deborah H., Yeo, Gene W.
Publicado 2016

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins

por Van Nostrand, Eric L., Pratt, Gabriel A., Yee, Brian A., Wheeler, Emily C., Blue, Steven M., Mueller, Jasmine, Park, Samuel S., Garcia, Keri E., Gelboin-Burkhart, Chelsea, Nguyen, Thai B., Rabano, Ines, Stanton, Rebecca, Sundararaman, Balaji, Wang, Ruth, Fu, Xiang-Dong, Graveley, Brenton R., Yeo, Gene W.
Publicado 2020

Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death

por Arif, Waqar, Mathur, Bhoomika, Saikali, Michael F., Chembazhi, Ullas V., Toohill, Katelyn, Song, You Jin, Hao, Qinyu, Karimi, Saman, Blue, Steven M., Yee, Brian A., Van Nostrand, Eric L., Bangru, Sushant, Guzman, Grace, Yeo, Gene W., Prasanth, Kannanganattu V., Anakk, Sayeepriyadarshini, Cummins, Carolyn L., Kalsotra, Auinash
Publicado 2023

In Vivo Screening Unveils Pervasive RNA-Binding Protein Dependencies in Leukemic Stem Cells and Identifies ELAVL1 as a Therapeutic Target

por Vujovic, Ana, de Rooij, Laura, Chahi, Ava Keyvani, Chen, He Tian, Yee, Brian A., Loganathan, Sampath K., Liu, Lina, Chan, Derek C.H., Tajik, Amanda, Tsao, Emily, Moreira, Steven, Joshi, Pratik, Xu, Joshua, Wong, Nicholas, Balde, Zaldy, Jahangiri, Soheil, Zandi, Sasan, Aigner, Stefan, Dick, John E., Minden, Mark D., Schramek, Daniel, Yeo, Gene W., Hope, Kristin J.
Publicado 2023

Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions

por Xiang, Joy S., Mueller, Jasmine R., Luo, En-Ching, Yee, Brian A., Schafer, Danielle, Schmok, Jonathan C., Tan, Frederick E., Rothamel, Katherine, McVicar, Rachael N., Kwong, Elizabeth M., Jones, Krysten L., Her, Hsuan-Lin, Chen, Chun-Yuan, Vu, Anthony Q., Jin, Wenhao, Park, Samuel S., Le, Phuong, Brannan, Kristopher W., Kofman, Eric R., Li, Yanhua, Tankka, Alexandra T., Dong, Kevin D., Song, Yan, Carlin, Aaron F., Van Nostrand, Eric L., Leibel, Sandra L., Yeo, Gene W.
Publicado 2022

Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions

por Xiang, Joy S., Mueller, Jasmine R., Luo, En-Ching, Yee, Brian A., Schafer, Danielle, Schmok, Jonathan C., Tan, Frederick E., Rothamel, Katherine, McVicar, Rachael N., Kwong, Elizabeth M., Croker, Ben A., Jones, Krysten L., Her, Hsuan-Lin, Chen, Chun-Yuan, Vu, Anthony Q., Jin, Wenhao, Park, Samuel S., Le, Phuong, Brannan, Kristopher W., Kofman, Eric R., Li, Yanhua, Tankka, Alexandra T., Dong, Kevin D., Song, Yan, Clark, Alex E., Carlin, Aaron F., Van Nostrand, Eric L., Leibel, Sandra L., Yeo, Gene W.
Publicado 2022

The Host-Microbiome Response to Hyperbaric Oxygen Therapy in Ulcerative Colitis Patients

por Gonzalez, Carlos G., Mills, Robert H., Kordahi, Melissa C., Carrillo-Terrazas, Marvic, Secaira-Morocho, Henry, Widjaja, Christella E., Tsai, Matthew S., Mittal, Yash, Yee, Brian A., Vargas, Fernando, Weldon, Kelly, Gauglitz, Julia M., Delaroque, Clara, Sauceda, Consuelo, Rossitto, Leigh-Ana, Ackermann, Gail, Humphrey, Gregory, Swafford, Austin D., Siegel, Corey A., Buckey, Jay C., Raffals, Laura E., Sadler, Charlotte, Lindholm, Peter, Fisch, Kathleen M., Valaseck, Mark, Suriawinata, Arief, Yeo, Gene W., Ghosh, Pradipta, Chang, John T., Chu, Hiutung, Dorrestein, Pieter, Zhu, Qiyun, Chassaing, Benoit, Knight, Rob, Gonzalez, David J., Dulai, Parambir S.
Publicado 2022