Computational Methods for Assessing Chromatin Hierarchy

por Chang, Pearl, Gohain, Moloya, Yen, Ming-Ren, Chen, Pao-Yang
Publicado 2018

BSImp: Imputing Partially Observed Methylation Patterns for Evaluating Methylation Heterogeneity

por Chang, Ya-Ting Sabrina, Yen, Ming-Ren, Chen, Pao-Yang
Publicado 2022

MethGET: web-based bioinformatics software for correlating genome-wide DNA methylation and gene expression

por Teng, Chin-Sheng, Wu, Bing-Heng, Yen, Ming-Ren, Chen, Pao-Yang
Publicado 2020

Diversity of Fungal DNA Methyltransferases and Their Association With DNA Methylation Patterns

por Nai, Yu-Shin, Huang, Yu-Chun, Yen, Ming-Ren, Chen, Pao-Yang
Publicado 2021

The Transporter Classification Database: recent advances

por Saier, Milton H., Yen, Ming Ren, Noto, Keith, Tamang, Dorjee G., Elkan, Charles
Publicado 2009

Membrane Porters of ATP-Binding Cassette Transport Systems Are Polyphyletic

por Wang, Bin, Dukarevich, Maxim, Sun, Eric I., Yen, Ming Ren, Saier, Milton H.
Publicado 2009

Examining the condition-specific antisense transcription in S. cerevisiae and S. paradoxus

por Swamy, Krishna B S, Lin, Chih-Hsu, Yen, Ming-Ren, Wang, Chuen-Yi, Wang, Daryi
Publicado 2014

Detecting and prioritizing biosynthetic gene clusters for bioactive compounds in bacteria and fungi

por Tran, Phuong Nguyen, Yen, Ming-Ren, Chiang, Chen-Yu, Lin, Hsiao-Ching, Chen, Pao-Yang
Publicado 2019

Screening of Differentially Expressed Microsporidia Genes from Nosema ceranae Infected Honey Bees by Suppression Subtractive Hybridization

por Chang, Zih-Ting, Ko, Chong-Yu, Yen, Ming-Ren, Chen, Yue-Wen, Nai, Yu-Shin
Publicado 2020

Correction: MethylC‑analyzer: a comprehensive downstream pipeline for the analysis of genome‑wide DNA methylation

por Lu, Rita Jui‑Hsien, Lin, Pei‑Yu, Yen, Ming‑Ren, Wu, Bing‑Heng, Chen, Pao‑Yang
Publicado 2023

MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data

por Liao, Wen-Wei, Yen, Ming-Ren, Ju, Evaline, Hsu, Fei-Man, Lam, Larry, Chen, Pao-Yang
Publicado 2015

MethylC-analyzer: a comprehensive downstream pipeline for the analysis of genome-wide DNA methylation

por Lu, Rita Jui-Hsien, Lin, Pei-Yu, Yen, Ming-Ren, Wu, Bing-Heng, Chen, Pao-Yang
Publicado 2023

The Bacterial Intimins and Invasins: A Large and Novel Family of Secreted Proteins

por Tsai, Jennifer C., Yen, Ming-Ren, Castillo, Rostislav, Leyton, Denisse L., Henderson, Ian R., Saier, Milton H.
Publicado 2010

Optimized reduced representation bisulfite sequencing reveals tissue-specific mCHH islands in maize

por Hsu, Fei-Man, Yen, Ming-Ren, Wang, Chi-Ting, Lin, Chien-Yu, Wang, Chung-Ju Rachel, Chen, Pao-Yang
Publicado 2017

ATACgraph: Profiling Genome-Wide Chromatin Accessibility From ATAC-seq

por Lu, Rita Jui-Hsien, Liu, Yen-Ting, Huang, Chih Wei, Yen, Ming-Ren, Lin, Chung-Yen, Chen, Pao-Yang
Publicado 2021

Whole-genome DNA methylome analysis of different developmental stages of the entomopathogenic fungus Beauveria bassiana NCHU-157 by nanopore sequencing

por Li, Yi-Hsuan, Chang, Ju-Chun, Yen, Ming-Ren, Huang, Yu-Feng, Chen, Tzu-Han, Chen, Li-Hung, Nai, Yu-Shin
Publicado 2023

TRIM28-Regulated Transposon Repression Is Required for Human Germline Competency and Not Primed or Naive Human Pluripotency

por Tao, Yu, Yen, Ming-Ren, Chitiashvili, Tsotne, Nakano, Haruko, Kim, Rachel, Hosohama, Linzi, Tan, Yao Chang, Nakano, Atsushi, Chen, Pao-Yang, Clark, Amander T.
Publicado 2017

HISTONE DEACETYLASE 15 and MOS4-associated complex subunits 3A/3B coregulate intron retention of ABA-responsive genes

por Tu, Yi-Tsung, Chen, Chia-Yang, Huang, Yi-Sui, Chang, Chung-Han, Yen, Ming-Ren, Hsieh, Jo-Wei Allison, Chen, Pao-Yang, Wu, Keqiang
Publicado 2022

The expression of long non-coding RNAs is associated with H3Ac and H3K4me2 changes regulated by the HDA6-LDL1/2 histone modification complex in Arabidopsis

por Hung, Fu-Yu, Chen, Chen, Yen, Ming-Ren, Hsieh, Jo-Wei Allison, Li, Chenlong, Shih, Yuan-Hsin, Chen, Fang-Fang, Chen, Pao-Yang, Cui, Yuhai, Wu, Keqiang
Publicado 2020

Transcriptome-level assessment of the impact of deformed wing virus on honey bee larvae

por Chang, Zih-Ting, Huang, Yu-Feng, Chen, Yue-Wen, Yen, Ming-Ren, Hsu, Po-Ya, Chen, Tzu-Han, Li, Yi-Hsuan, Chiu, Kuo-Ping, Nai, Yu-Shin
Publicado 2021