GTRD: a database of transcription factor binding sites identified by ChIP-seq experiments

por Yevshin, Ivan, Sharipov, Ruslan, Valeev, Tagir, Kel, Alexander, Kolpakov, Fedor
Publicado 2017

GTRD: a database on gene transcription regulation—2019 update

por Yevshin, Ivan, Sharipov, Ruslan, Kolmykov, Semyon, Kondrakhin, Yury, Kolpakov, Fedor
Publicado 2019

Assessment of transcriptional importance of cell line-specific features based on GTRD and FANTOM5 data

por Sharipov, Ruslan N., Kondrakhin, Yury V., Ryabova, Anna S., Yevshin, Ivan S., Kolpakov, Fedor A.
Publicado 2020

Population size estimation for quality control of ChIP-Seq datasets

por Kolmykov, Semyon K., Kondrakhin, Yury V., Yevshin, Ivan S., Sharipov, Ruslan N., Ryabova, Anna S., Kolpakov, Fedor A.
Publicado 2019

Genome-wide map of human and mouse transcription factor binding sites aggregated from ChIP-Seq data

por Vorontsov, Ilya E., Fedorova, Alla D., Yevshin, Ivan S., Sharipov, Ruslan N., Kolpakov, Fedor A., Makeev, Vsevolod J., Kulakovskiy, Ivan V.
Publicado 2018

GTRD: an integrated view of transcription regulation

por Kolmykov, Semyon, Yevshin, Ivan, Kulyashov, Mikhail, Sharipov, Ruslan, Kondrakhin, Yury, Makeev, Vsevolod J, Kulakovskiy, Ivan V, Kel, Alexander, Kolpakov, Fedor
Publicado 2020

BioUML: an integrated environment for systems biology and collaborative analysis of biomedical data

por Kolpakov, Fedor, Akberdin, Ilya, Kashapov, Timur, Kiselev, llya, Kolmykov, Semyon, Kondrakhin, Yury, Kutumova, Elena, Mandrik, Nikita, Pintus, Sergey, Ryabova, Anna, Sharipov, Ruslan, Yevshin, Ivan, Kel, Alexander
Publicado 2019

BioUML—towards a universal research platform

por Kolpakov, Fedor, Akberdin, Ilya, Kiselev, Ilya, Kolmykov, Semyon, Kondrakhin, Yury, Kulyashov, Mikhail, Kutumova, Elena, Pintus, Sergey, Ryabova, Anna, Sharipov, Ruslan, Yevshin, Ivan, Zhatchenko, Sergey, Kel, Alexander
Publicado 2022

Genome-Wide Atlas of Promoter Expression Reveals Contribution of Transcribed Regulatory Elements to Genetic Control of Disuse-Mediated Atrophy of Skeletal Muscle

por Pintus, Sergey S., Akberdin, Ilya R., Yevshin, Ivan, Makhnovskii, Pavel, Tyapkina, Oksana, Nigmetzyanov, Islam, Nurullin, Leniz, Devyatiyarov, Ruslan, Shagimardanova, Elena, Popov, Daniil, Kolpakov, Fedor A., Gusev, Oleg, Gazizova, Guzel R.
Publicado 2021

HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models

por Kulakovskiy, Ivan V., Vorontsov, Ilya E., Yevshin, Ivan S., Soboleva, Anastasiia V., Kasianov, Artem S., Ashoor, Haitham, Ba-alawi, Wail, Bajic, Vladimir B., Medvedeva, Yulia A., Kolpakov, Fedor A., Makeev, Vsevolod J.
Publicado 2016

ANANASTRA: annotation and enrichment analysis of allele-specific transcription factor binding at SNPs

por Boytsov, Alexandr, Abramov, Sergey, Aiusheeva, Ariuna Z, Kasianova, Alexandra M, Baulin, Eugene, Kuznetsov, Ivan A, Aulchenko, Yurii S, Kolmykov, Semyon, Yevshin, Ivan, Kolpakov, Fedor, Vorontsov, Ilya E, Makeev, Vsevolod J, Kulakovskiy, Ivan V
Publicado 2022

Landscape of allele-specific transcription factor binding in the human genome

por Abramov, Sergey, Boytsov, Alexandr, Bykova, Daria, Penzar, Dmitry D., Yevshin, Ivan, Kolmykov, Semyon K., Fridman, Marina V., Favorov, Alexander V., Vorontsov, Ilya E., Baulin, Eugene, Kolpakov, Fedor, Makeev, Vsevolod J., Kulakovskiy, Ivan V.
Publicado 2021

HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis

por Kulakovskiy, Ivan V, Vorontsov, Ilya E, Yevshin, Ivan S, Sharipov, Ruslan N, Fedorova, Alla D, Rumynskiy, Eugene I, Medvedeva, Yulia A, Magana-Mora, Arturo, Bajic, Vladimir B, Papatsenko, Dmitry A, Kolpakov, Fedor A, Makeev, Vsevolod J
Publicado 2018

Walking pathways with positive feedback loops reveal DNA methylation biomarkers of colorectal cancer

por Kel, Alexander, Boyarskikh, Ulyana, Stegmaier, Philip, Leskov, Leonid S., Sokolov, Andrey V., Yevshin, Ivan, Mandrik, Nikita, Stelmashenko, Daria, Koschmann, Jeannette, Kel-Margoulis, Olga, Krull, Mathias, Martínez-Cardús, Anna, Moran, Sebastian, Esteller, Manel, Kolpakov, Fedor, Filipenko, Maxim, Wingender, Edgar
Publicado 2019