Expanding the World of Marine Bacterial and Archaeal Clades

by Yilmaz, Pelin, Yarza, Pablo, Rapp, Josephine Z., Glöckner, Frank O.
Published 2016

SILVA tree viewer: interactive web browsing of the SILVA phylogenetic guide trees

by Beccati, Alan, Gerken, Jan, Quast, Christian, Yilmaz, Pelin, Glöckner, Frank Oliver
Published 2017

Phylogeny-aware identification and correction of taxonomically mislabeled sequences

by Kozlov, Alexey M., Zhang, Jiajie, Yilmaz, Pelin, Glöckner, Frank Oliver, Stamatakis, Alexandros
Published 2016

MetaBar - a tool for consistent contextual data acquisition and standards compliant submission

by Hankeln, Wolfgang, Buttigieg, Pier Luigi, Fink, Dennis, Kottmann, Renzo, Yilmaz, Pelin, Glöckner, Frank Oliver
Published 2010

Meeting report: GSC M5 roundtable at the 13th International Society for Microbial Ecology meeting in Seattle, WA, USA August 22-27, 2010

by Gilbert, Jack A., Meyer, Folker, Knight, Rob, Field, Dawn, Kyrpides, Nikos, Yilmaz, Pelin, Wooley, John
Published 2010

MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources

by Tsesmetzis, Nicolas, Yilmaz, Pelin, Marks, Peter C., Kyrpides, Nikos C., Head, Ian M., Lomans, Bart P.
Published 2016

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

by Quast, Christian, Pruesse, Elmar, Yilmaz, Pelin, Gerken, Jan, Schweer, Timmy, Yarza, Pablo, Peplies, Jörg, Glöckner, Frank Oliver
Published 2013

Ecogenomic Perspectives on Domains of Unknown Function: Correlation-Based Exploration of Marine Metagenomes

by Buttigieg, Pier Luigi, Hankeln, Wolfgang, Kostadinov, Ivaylo, Kottmann, Renzo, Yilmaz, Pelin, Duhaime, Melissa Beth, Glöckner, Frank Oliver
Published 2013

Meta-omics data and collection objects (MOD-CO): a conceptual schema and data model for processing sample data in meta-omics research

by Rambold, Gerhard, Yilmaz, Pelin, Harjes, Janno, Klaster, Sabrina, Sanz, Veronica, Link, Anton, Glöckner, Frank Oliver, Triebel, Dagmar
Published 2019

Megx.net: integrated database resource for marine ecological genomics

by Kottmann, Renzo, Kostadinov, Ivalyo, Duhaime, Melissa Beth, Buttigieg, Pier Luigi, Yilmaz, Pelin, Hankeln, Wolfgang, Waldmann, Jost, Glöckner, Frank Oliver
Published 2010

Plant specimen contextual data consensus

by Hoopen, Petra ten, Walls, Ramona L., Cannon, Ethalinda KS, Cochrane, Guy, Cole, James, Johnston, Anjanette, Karsch-Mizrachi, Ilene, Yilmaz, Pelin
Published 2016

CDinFusion – Submission-Ready, On-Line Integration of Sequence and Contextual Data

by Hankeln, Wolfgang, Wendel, Norma Johanna, Gerken, Jan, Waldmann, Jost, Buttigieg, Pier Luigi, Kostadinov, Ivaylo, Kottmann, Renzo, Yilmaz, Pelin, Glöckner, Frank Oliver
Published 2011

Improved taxonomic assignment of rumen bacterial 16S rRNA sequences using a revised SILVA taxonomic framework

by Henderson, Gemma, Yilmaz, Pelin, Kumar, Sandeep, Forster, Robert J., Kelly, William J., Leahy, Sinead C., Guan, Le Luo, Janssen, Peter H.
Published 2019

The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks

by Yilmaz, Pelin, Parfrey, Laura Wegener, Yarza, Pablo, Gerken, Jan, Pruesse, Elmar, Quast, Christian, Schweer, Timmy, Peplies, Jörg, Ludwig, Wolfgang, Glöckner, Frank Oliver
Published 2014

Identification of Habitat-Specific Biomes of Aquatic Fungal Communities Using a Comprehensive Nearly Full-Length 18S rRNA Dataset Enriched with Contextual Data

by Panzer, Katrin, Yilmaz, Pelin, Weiß, Michael, Reich, Lothar, Richter, Michael, Wiese, Jutta, Schmaljohann, Rolf, Labes, Antje, Imhoff, Johannes F., Glöckner, Frank Oliver, Reich, Marlis
Published 2015

The genomic standards consortium: bringing standards to life for microbial ecology

by Yilmaz, Pelin, Gilbert, Jack A, Knight, Rob, Amaral-Zettler, Linda, Karsch-Mizrachi, Ilene, Cochrane, Guy, Nakamura, Yasukazu, Sansone, Susanna-Assunta, Glöckner, Frank Oliver, Field, Dawn
Published 2011

Quest for Orthologs Entails Quest for Tree of Life: In Search of the Gene Stream

by Boeckmann, Brigitte, Marcet-Houben, Marina, Rees, Jonathan A., Forslund, Kristoffer, Huerta-Cepas, Jaime, Muffato, Matthieu, Yilmaz, Pelin, Xenarios, Ioannis, Bork, Peer, Lewis, Suzanna E., Gabaldón, Toni
Published 2015

Versatile cyanobacteria control the timing and extent of sulfide production in a Proterozoic analog microbial mat

by Klatt, Judith M., Gomez-Saez, Gonzalo V., Meyer, Steffi, Ristova, Petra Pop, Yilmaz, Pelin, Granitsiotis, Michael S., Macalady, Jennifer L., Lavik, Gaute, Polerecky, Lubos, Bühring, Solveig I.
Published 2020

Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets

by Morrison, Norman, Hancock, David, Hirschman, Lynette, Dawyndt, Peter, Verslyppe, Bert, Kyrpides, Nikos, Kottmann, Renzo, Yilmaz, Pelin, Glöckner, Frank Oliver, Grethe, Jeff, Booth, Tim, Sterk, Peter, Nenadic, Goran, Field, Dawn
Published 2011

Meeting Report: Hackathon-Workshop on Darwin Core and MIxS Standards Alignment (February 2012)

by Tuama, Éamonn Ó, Deck, John, Dröge, Gabriel, Döring, Markus, Field, Dawn, Kottmann, Renzo, Ma, Juncai, Mori, Hiroshi, Morrison, Norman, Sterk, Peter, Sugawara, Hideaki, Wieczorek, John, Wu, Linhuan, Yilmaz, Pelin
Published 2012