Training set expansion: an approach to improving the reconstruction of biological networks from limited and uneven reliable interactions

por Yip, Kevin Y., Gerstein, Mark
Publicado 2009

Integrating Information in Biological Ontologies and Molecular Networks to Infer Novel Terms

por Li, Le, Yip, Kevin Y.
Publicado 2016

Machine learning and genome annotation: a match meant to be?

por Yip, Kevin Y, Cheng, Chao, Gerstein, Mark
Publicado 2013

A novel method for discovering local spatial clusters of genomic regions with functional relationships from DNA contact maps

por Hu, Xihao, Shi, Christina Huan, Yip, Kevin Y.
Publicado 2016

Genome-wide analysis of chromatin features identifies histone modification sensitive and insensitive yeast transcription factors

por Cheng, Chao, Shou, Chong, Yip, Kevin Y, Gerstein, Mark B
Publicado 2011

Systematic exploration of autonomous modules in noisy microRNA-target networks for testing the generality of the ceRNA hypothesis

por Yip, Danny Kit-Sang, Pang, Iris K, Yip, Kevin Y
Publicado 2014

Multi-level learning: improving the prediction of protein, domain and residue interactions by allowing information flow between levels

por Yip, Kevin Y, Kim, Philip M, McDermott, Drew, Gerstein, Mark
Publicado 2009

Improved Reconstruction of In Silico Gene Regulatory Networks by Integrating Knockout and Perturbation Data

por Yip, Kevin Y., Alexander, Roger P., Yan, Koon-Kiu, Gerstein, Mark
Publicado 2010

VAS: a convenient web portal for efficient integration of genomic features with millions of genetic variants

por Ho, Eric Dun, Cao, Qin, Lee, Sau Dan, Yip, Kevin Y
Publicado 2014

Accurate reconstruction of viral genomes in human cells from short reads using iterative refinement

por Lee, Sau-Dan, Wu, Man, Lo, Kwok-Wai, Yip, Kevin Y.
Publicado 2022

Are special read alignment strategies necessary and cost-effective when handling sequencing reads from patient-derived tumor xenografts?

por Tso, Kai-Yuen, Lee, Sau Dan, Lo, Kwok-Wai, Yip, Kevin Y
Publicado 2014

OMTools: a software package for visualizing and processing optical mapping data

por Leung, Alden King-Yung, Jin, Nana, Yip, Kevin Y, Chan, Ting-Fung
Publicado 2017

New guidelines for DNA methylome studies regarding 5-hydroxymethylcytosine for understanding transcriptional regulation

por Li, Le, Gao, Yuwei, Wu, Qiong, Cheng, Alfred S.L., Yip, Kevin Y.
Publicado 2019

Deep learning identifies and quantifies recombination hotspot determinants

por Li, Yu, Chen, Siyuan, Rapakoulia, Trisevgeni, Kuwahara, Hiroyuki, Yip, Kevin Y, Gao, Xin
Publicado 2022

LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics

por Smith, Andrew K, Cheung, Kei-Hoi, Yip, Kevin Y, Schultz, Martin, Gerstein, Mark B
Publicado 2007

A statistical framework for modeling gene expression using chromatin features and application to modENCODE datasets

por Cheng, Chao, Yan, Koon-Kiu, Yip, Kevin Y, Rozowsky, Joel, Alexander, Roger, Shou, Chong, Gerstein, Mark
Publicado 2011

FunSeq2: a framework for prioritizing noncoding regulatory variants in cancer

por Fu, Yao, Liu, Zhu, Lou, Shaoke, Bedford, Jason, Mu, Xinmeng Jasmine, Yip, Kevin Y, Khurana, Ekta, Gerstein, Mark
Publicado 2014

Identification of specificity determining residues in peptide recognition domains using an information theoretic approach applied to large-scale binding maps

por Yip, Kevin Y, Utz, Lukas, Sitwell, Simon, Hu, Xihao, Sidhu, Sachdev S, Turk, Benjamin E, Gerstein, Mark, Kim, Philip M
Publicado 2011

A web services choreography scenario for interoperating bioinformatics applications

por de Knikker, Remko, Guo, Youjun, Li, Jin-long, Kwan, Albert KH, Yip, Kevin Y, Cheung, David W, Cheung, Kei-Hoi
Publicado 2004

OMBlast: alignment tool for optical mapping using a seed-and-extend approach

por Leung, Alden King-Yung, Kwok, Tsz-Piu, Wan, Raymond, Xiao, Ming, Kwok, Pui-Yan, Yip, Kevin Y, Chan, Ting-Fung
Publicado 2017