HapTree: A Novel Bayesian Framework for Single Individual Polyplotyping Using NGS Data

por Berger, Emily, Yorukoglu, Deniz, Peng, Jian, Berger, Bonnie
Publicado 2014

Dissect: detection and characterization of novel structural alterations in transcribed sequences

por Yorukoglu, Deniz, Hach, Faraz, Swanson, Lucas, Collins, Colin C., Birol, Inanc, Sahinalp, S. Cenk
Publicado 2012

Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery

por Hormozdiari, Fereydoun, Hajirasouliha, Iman, Dao, Phuong, Hach, Faraz, Yorukoglu, Deniz, Alkan, Can, Eichler, Evan E., Sahinalp, S. Cenk
Publicado 2010

Improved haplotype inference by exploiting long-range linking and allelic imbalance in RNA-seq datasets

por Berger, Emily, Yorukoglu, Deniz, Zhang, Lillian, Nyquist, Sarah K., Shalek, Alex K., Kellis, Manolis, Numanagić, Ibrahim, Berger, Bonnie
Publicado 2020

Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies

por Swanson, Lucas, Robertson, Gordon, Mungall, Karen L, Butterfield, Yaron S, Chiu, Readman, Corbett, Richard D, Docking, T Roderick, Hogge, Donna, Jackman, Shaun D, Moore, Richard A, Mungall, Andrew J, Nip, Ka Ming, Parker, Jeremy DK, Qian, Jenny Qing, Raymond, Anthony, Sung, Sandy, Tam, Angela, Thiessen, Nina, Varhol, Richard, Wang, Sherry, Yorukoglu, Deniz, Zhao, YongJun, Hoodless, Pamela A, Sahinalp, S Cenk, Karsan, Aly, Birol, Inanc
Publicado 2013