Scattered manifold-valued data approximation

por Grohs, Philipp, Sprecher, Markus, Yu, Thomas
Publicado 2016

Piloting a model-to-data approach to enable predictive analytics in health care through patient mortality prediction

por Bergquist, Timothy, Yan, Yao, Schaffter, Thomas, Yu, Thomas, Pejaver, Vikas, Hammarlund, Noah, Prosser, Justin, Guinney, Justin, Mooney, Sean
Publicado 2020

Semantic workflows for benchmark challenges: Enhancing comparability, reusability and reproducibility

por Srivastava, Arunima, Adusumilli, Ravali, Boyce, Hunter, Garijo, Daniel, Ratnakar, Varun, Mayani, Rajiv, Yu, Thomas, Machiraju, Raghu, Gil, Yolanda, Mallick, Parag
Publicado 2019

Cell‐to‐cell and type‐to‐type heterogeneity of signaling networks: insights from the crowd

por Gabor, Attila, Tognetti, Marco, Driessen, Alice, Tanevski, Jovan, Guo, Baosen, Cao, Wencai, Shen, He, Yu, Thomas, Chung, Verena, Bodenmiller, Bernd, Saez‐Rodriguez, Julio
Publicado 2021

A high-throughput molecular data resource for cutaneous neurofibromas

por Gosline, Sara J.C., Weinberg, Hubert, Knight, Pamela, Yu, Thomas, Guo, Xindi, Prasad, Nripesh, Jones, Angela, Shrestha, Shristi, Boone, Braden, Levy, Shawn E., La Rosa, Salvatore, Guinney, Justin, Bakker, Annette
Publicado 2017

Fetal Brain Biometric Measurements on 3D Super-Resolution Reconstructed T2-Weighted MRI: An Intra- and Inter-observer Agreement Study

por Khawam, Marie, de Dumast, Priscille, Deman, Pierre, Kebiri, Hamza, Yu, Thomas, Tourbier, Sébastien, Lajous, Hélène, Hagmann, Patric, Maeder, Philippe, Thiran, Jean-Philippe, Meuli, Reto, Dunet, Vincent, Bach Cuadra, Meritxell, Koob, Mériam
Publicado 2021

Reproducible biomedical benchmarking in the cloud: lessons from crowd-sourced data challenges

por Ellrott, Kyle, Buchanan, Alex, Creason, Allison, Mason, Michael, Schaffter, Thomas, Hoff, Bruce, Eddy, James, Chilton, John M., Yu, Thomas, Stuart, Joshua M., Saez-Rodriguez, Julio, Stolovitzky, Gustavo, Boutros, Paul C., Guinney, Justin
Publicado 2019

Linked Entity Attribute Pair (LEAP): A Harmonization Framework for Data Pooling

por Thomas, Stacy, Lichtenberg, Tara, Dang, Kristen, Fitzsimons, Michael, Grossman, Robert L., Kundra, Ritika, Lavery, Jessica A., Lenoue-Newton, Michele L., Panageas, Katherine S., Sawyers, Charles, Schultz, Nikolaus D., Sirintrapun, Sahussapont J., Topaloglu, Umit, Welch, Angelica, Yu, Thomas, Zehir, Ahmet, Gardos, Stuart
Publicado 2020

Crowdsourcing assessment of maternal blood multi-omics for predicting gestational age and preterm birth

por Tarca, Adi L., Pataki, Bálint Ármin, Romero, Roberto, Sirota, Marina, Guan, Yuanfang, Kutum, Rintu, Gomez-Lopez, Nardhy, Done, Bogdan, Bhatti, Gaurav, Yu, Thomas, Andreoletti, Gaia, Chaiworapongsa, Tinnakorn, Hassan, Sonia S., Hsu, Chaur-Dong, Aghaeepour, Nima, Stolovitzky, Gustavo, Csabai, Istvan, Costello, James C.
Publicado 2021

A Continuously Benchmarked and Crowdsourced Challenge for Rapid Development and Evaluation of Models to Predict COVID-19 Diagnosis and Hospitalization

por Yan, Yao, Schaffter, Thomas, Bergquist, Timothy, Yu, Thomas, Prosser, Justin, Aydin, Zafer, Jabeer, Amhar, Brugere, Ivan, Gao, Jifan, Chen, Guanhua, Causey, Jason, Yao, Yuxin, Bryson, Kevin, Long, Dustin R., Jarvik, Jeffrey G., Lee, Christoph I., Wilcox, Adam, Guinney, Justin, Mooney, Sean
Publicado 2021

A Fetal Brain magnetic resonance Acquisition Numerical phantom (FaBiAN)

por Lajous, Hélène, Roy, Christopher W., Hilbert, Tom, de Dumast, Priscille, Tourbier, Sébastien, Alemán-Gómez, Yasser, Yerly, Jérôme, Yu, Thomas, Kebiri, Hamza, Payette, Kelly, Ledoux, Jean-Baptiste, Meuli, Reto, Hagmann, Patric, Jakab, Andras, Dunet, Vincent, Koob, Mériam, Kober, Tobias, Stuber, Matthias, Bach Cuadra, Meritxell
Publicado 2022

A Scalable Quality Assurance Process for Curating Oncology Electronic Health Records: The Project GENIE Biopharma Collaborative Approach

por Lavery, Jessica A., Lepisto, Eva M., Brown, Samantha, Rizvi, Hira, McCarthy, Caroline, LeNoue-Newton, Michele, Yu, Celeste, Lee, Jasme, Guo, Xindi, Yu, Thomas, Rudolph, Julia, Sweeney, Shawn, Park, Ben Ho, Warner, Jeremy L., Bedard, Philippe L., Riely, Gregory, Schrag, Deborah, Panageas, Katherine S.
Publicado 2022

Variability and reproducibility of multi-echo T(2) relaxometry: Insights from multi-site, multi-session and multi-subject MRI acquisitions

por Fischi-Gomez, Elda, Girard, Gabriel, Koch, Philipp J., Yu, Thomas, Pizzolato, Marco, Brügger, Julia, Piredda, Gian Franco, Hilbert, Tom, Cadic-Melchior, Andéol G., Beanato, Elena, Park, Chang-Hyun, Morishita, Takuya, Wessel, Maximilian J., Schiavi, Simona, Daducci, Alessandro, Kober, Tobias, Canales-Rodríguez, Erick J., Hummel, Friedhelm C., Thiran, Jean-Philippe
Publicado 2022

A Crowdsourcing Approach to Develop Machine Learning Models to Quantify Radiographic Joint Damage in Rheumatoid Arthritis

por Sun, Dongmei, Nguyen, Thanh M., Allaway, Robert J., Wang, Jelai, Chung, Verena, Yu, Thomas V., Mason, Michael, Dimitrovsky, Isaac, Ericson, Lars, Li, Hongyang, Guan, Yuanfang, Israel, Ariel, Olar, Alex, Pataki, Balint Armin, Stolovitzky, Gustavo, Guinney, Justin, Gulko, Percio S., Frazier, Mason B., Chen, Jake Y., Costello, James C., Bridges, S. Louis
Publicado 2022

AACR Project GENIE: 100,000 Cases and Beyond

por Pugh, Trevor J., Bell, Jonathan L., Bruce, Jeff P., Doherty, Gary J., Galvin, Matthew, Green, Michelle F., Hunter-Zinck, Haley, Kumari, Priti, Lenoue-Newton, Michele L., Li, Marilyn M., Lindsay, James, Mazor, Tali, Ovalle, Andrea, Sammut, Stephen-John, Schultz, Nikolaus, Yu, Thomas V., Sweeney, Shawn M., Bernard, Brady
Publicado 2022

A crowdsourced analysis to identify ab initio molecular signatures predictive of susceptibility to viral infection

por Fourati, Slim, Talla, Aarthi, Mahmoudian, Mehrad, Burkhart, Joshua G., Klén, Riku, Henao, Ricardo, Yu, Thomas, Aydın, Zafer, Yeung, Ka Yee, Ahsen, Mehmet Eren, Almugbel, Reem, Jahandideh, Samad, Liang, Xiao, Nordling, Torbjörn E. M., Shiga, Motoki, Stanescu, Ana, Vogel, Robert, Pandey, Gaurav, Chiu, Christopher, McClain, Micah T., Woods, Christopher W., Ginsburg, Geoffrey S., Elo, Laura L., Tsalik, Ephraim L., Mangravite, Lara M., Sieberts, Solveig K.
Publicado 2018

Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen

por Menden, Michael P., Wang, Dennis, Mason, Mike J., Szalai, Bence, Bulusu, Krishna C., Guan, Yuanfang, Yu, Thomas, Kang, Jaewoo, Jeon, Minji, Wolfinger, Russ, Nguyen, Tin, Zaslavskiy, Mikhail, Jang, In Sock, Ghazoui, Zara, Ahsen, Mehmet Eren, Vogel, Robert, Neto, Elias Chaibub, Norman, Thea, Tang, Eric K. Y., Garnett, Mathew J., Veroli, Giovanni Y. Di, Fawell, Stephen, Stolovitzky, Gustavo, Guinney, Justin, Dry, Jonathan R., Saez-Rodriguez, Julio
Publicado 2019

A DREAM Challenge to Build Prediction Models for Short-Term Discontinuation of Docetaxel in Metastatic Castration-Resistant Prostate Cancer

por Seyednasrollah, Fatemeh, Koestler, Devin C., Wang, Tao, Piccolo, Stephen R., Vega, Roberto, Greiner, Russell, Fuchs, Christiane, Gofer, Eyal, Kumar, Luke, Wolfinger, Russell D., Kanigel Winner, Kimberly, Bare, Chris, Neto, Elias Chaibub, Yu, Thomas, Shen, Liji, Abdallah, Kald, Norman, Thea, Stolovitzky, Gustavo, Soule, Howard R., Sweeney, Christopher J., Ryan, Charles J., Scher, Howard I., Sartor, Oliver, Elo, Laura L., Zhou, Fang Liz, Guinney, Justin, Costello, James C.
Publicado 2017

Gene selection for optimal prediction of cell position in tissues from single-cell transcriptomics data

por Tanevski, Jovan, Nguyen, Thin, Truong, Buu, Karaiskos, Nikos, Ahsen, Mehmet Eren, Zhang, Xinyu, Shu, Chang, Xu, Ke, Liang, Xiaoyu, Hu, Ying, Pham, Hoang VV, Xiaomei, Li, Le, Thuc D, Tarca, Adi L, Bhatti, Gaurav, Romero, Roberto, Karathanasis, Nestoras, Loher, Phillipe, Chen, Yang, Ouyang, Zhengqing, Mao, Disheng, Zhang, Yuping, Zand, Maryam, Ruan, Jianhua, Hafemeister, Christoph, Qiu, Peng, Tran, Duc, Nguyen, Tin, Gabor, Attila, Yu, Thomas, Guinney, Justin, Glaab, Enrico, Krause, Roland, Banda, Peter, Stolovitzky, Gustavo, Rajewsky, Nikolaus, Saez-Rodriguez, Julio, Meyer, Pablo
Publicado 2020

Multiple Myeloma DREAM Challenge reveals epigenetic regulator PHF19 as marker of aggressive disease

por Mason, Mike J., Schinke, Carolina, Eng, Christine L. P., Towfic, Fadi, Gruber, Fred, Dervan, Andrew, White, Brian S., Pratapa, Aditya, Guan, Yuanfang, Chen, Hongjie, Cui, Yi, Li, Bailiang, Yu, Thomas, Chaibub Neto, Elias, Mavrommatis, Konstantinos, Ortiz, Maria, Lyzogubov, Valeriy, Bisht, Kamlesh, Dai, Hongyue Y., Schmitz, Frank, Flynt, Erin, Dan Rozelle, Danziger, Samuel A., Ratushny, Alexander, Dalton, William S., Goldschmidt, Hartmut, Avet-Loiseau, Herve, Samur, Mehmet, Hayete, Boris, Sonneveld, Pieter, Shain, Kenneth H., Munshi, Nikhil, Auclair, Daniel, Hose, Dirk, Morgan, Gareth, Trotter, Matthew, Bassett, Douglas, Goke, Jonathan, Walker, Brian A., Thakurta, Anjan, Guinney, Justin
Publicado 2020