PAGER Web APP: An Interactive, Online Gene Set and Network Interpretation Tool for Functional Genomics

por Yue, Zongliang, Slominski, Radomir, Bharti, Samuel, Chen, Jake Y.
Publicado 2022

DEMA: a distance-bounded energy-field minimization algorithm to model and layout biomolecular networks with quantitative features

por Weng, Zhenyu, Yue, Zongliang, Zhu, Yuesheng, Chen, Jake Yue
Publicado 2022

SLDR: a computational technique to identify novel genetic regulatory relationships

por Yue, Zongliang, Wan, Ping, Huang, Hui, Xie, Zhan, Chen, Jake Y
Publicado 2014

BEERE: a web server for biomedical entity expansion, ranking and explorations

por Yue, Zongliang, Willey, Christopher D, Hjelmeland, Anita B, Chen, Jake Y
Publicado 2019

DMAP: a connectivity map database to enable identification of novel drug repositioning candidates

por Huang, Hui, Nguyen, Thanh, Ibrahim, Sara, Shantharam, Sandeep, Yue, Zongliang, Chen, Jake Y
Publicado 2015

Statistical Enrichment Analysis of Samples: A General-Purpose Tool to Annotate Metadata Neighborhoods of Biological Samples

por Nguyen, Thanh M., Bharti, Samuel, Yue, Zongliang, Willey, Christopher D., Chen, Jake Y.
Publicado 2021

Corrigendum: Statistical Enrichment Analysis of Samples: A General-Purpose Tool to Annotate Metadata Neighborhoods of Biological Samples

por Nguyen, Thanh M., Bharti, Samuel, Yue, Zongliang, Willey, Christopher D., Chen, Jake Y.
Publicado 2021

WINNER: A network biology tool for biomolecular characterization and prioritization

por Nguyen, Thanh, Yue, Zongliang, Slominski, Radomir, Welner, Robert, Zhang, Jianyi, Chen, Jake Y.
Publicado 2022

Repositioning drugs by targeting network modules: a Parkinson’s disease case study

por Yue, Zongliang, Arora, Itika, Zhang, Eric Y., Laufer, Vincent, Bridges, S. Louis, Chen, Jake Y.
Publicado 2017

PAGER: constructing PAGs and new PAG–PAG relationships for network biology

por Yue, Zongliang, Kshirsagar, Madhura M., Nguyen, Thanh, Suphavilai, Chayaporn, Neylon, Michael T., Zhu, Liugen, Ratliff, Timothy, Chen, Jake Y.
Publicado 2015

PAGER 2.0: an update to the pathway, annotated-list and gene-signature electronic repository for Human Network Biology

por Yue, Zongliang, Zheng, Qi, Neylon, Michael T, Yoo, Minjae, Shin, Jimin, Zhao, Zhiying, Tan, Aik Choon, Chen, Jake Y
Publicado 2018

PAGER-CoV: a comprehensive collection of pathways, annotated gene-lists and gene signatures for coronavirus disease studies

por Yue, Zongliang, Zhang, Eric, Xu, Clark, Khurana, Sunny, Batra, Nishant, Dang, Son Do Hai, Cimino, James J, Chen, Jake Y
Publicado 2020

Graft-Versus-Host Disease–Free Antitumoral Signature After Allogeneic Donor Lymphocyte Injection Identified by Proteomics and Systems Biology

por Liu, Xiaowen, Yue, Zongliang, Cao, Yimou, Taylor, Lauren, Zhang, Qing, Choi, Sung W., Hanash, Samir, Ito, Sawa, Chen, Jake Y., Wu, Huanmei, Paczesny, Sophie
Publicado 2019

An in vivo model of glioblastoma radiation resistance identifies long noncoding RNAs and targetable kinases

por Stackhouse, Christian T., Anderson, Joshua C., Yue, Zongliang, Nguyen, Thanh, Eustace, Nicholas J., Langford, Catherine P., Wang, Jelai, Rowland, James R., Xing, Chuan, Mikhail, Fady M., Cui, Xiangqin, Alrefai, Hasan, Bash, Ryan E., Lee, Kevin J., Yang, Eddy S., Hjelmeland, Anita B., Miller, C. Ryan, Chen, Jake Y., Gillespie, G. Yancey, Willey, Christopher D.
Publicado 2022

Metabolic alterations mediated by STAT3 promotes drug persistence in CML

por Patel, Sweta B., Nemkov, Travis, Stefanoni, Davide, Benavides, Gloria A., Bassal, Mahmoud A., Crown, Brittany L., Matkins, Victoria R., Camacho, Virginia, Kuznetsova, Valeriya, Hoang, Ashley T., Tenen, Danielle E., Wolock, Samuel L., Park, Jihye, Ying, Li, Yue, Zongliang, Chen, Jake Y., Yang, Henry, Tenen, Daniel G., Ferrell, Paul Brent, Lu, Rui, Darley-Usmar, Victor, D’Alessandro, Angelo, Bhatia, Ravi, Welner, Robert S.
Publicado 2021