Using gene expression data and network topology to detect substantial pathways, clusters and switches during oxygen deprivation of Escherichia coli

por Schramm, Gunnar, Zapatka, Marc, Eils, Roland, König, Rainer
Publicado 2007

confFuse: High-Confidence Fusion Gene Detection across Tumor Entities

por Huang, Zhiqin, Jones, David T. W., Wu, Yonghe, Lichter, Peter, Zapatka, Marc
Publicado 2017

Genome-wide identification of translationally inhibited and degraded miR-155 targets using RNA-interacting protein-IP

por Meier, Jan, Hovestadt, Volker, Zapatka, Marc, Pscherer, Armin, Lichter, Peter, Seiffert, Martina
Publicado 2013

Capture and Amplification by Tailing and Switching (CATS): An ultrasensitive ligation-independent method for generation of DNA libraries for deep sequencing from picogram amounts o...

por Turchinovich, Andrey, Surowy, Harald, Serva, Andrius, Zapatka, Marc, Lichter, Peter, Burwinkel, Barbara
Publicado 2014

CITED4 gene silencing in colorectal cancer cells modulates adherens/tight junction gene expression and reduces cell proliferation

por Rogers, Michael A., Kalter, Verena, Marcias, Gemma, Zapatka, Marc, Barbus, Sebastian, Lichter, Peter
Publicado 2015

STAT3 Single Nucleotide Polymorphism rs4796793 SNP Does Not Correlate with Response to Adjuvant IFNα Therapy in Stage III Melanoma Patients

por Schrama, David, Ugurel, Selma, Sucker, Antje, Ritter, Cathrin, Zapatka, Marc, Schadendorf, Dirk, Becker, Jürgen Christian
Publicado 2014

A novel cloning strategy for one-step assembly of multiplex CRISPR vectors

por Zuckermann, Marc, Hlevnjak, Mario, Yazdanparast, Haniyeh, Zapatka, Marc, Jones, David T. W., Lichter, Peter, Gronych, Jan
Publicado 2018

Discovering functional gene expression patterns in the metabolic network of Escherichia coli with wavelets transforms

por König, Rainer, Schramm, Gunnar, Oswald, Marcus, Seitz, Hanna, Sager, Sebastian, Zapatka, Marc, Reinelt, Gerhard, Eils, Roland
Publicado 2006

In silico SNP analysis of the breast cancer antigen NY-BR-1

por Kosaloglu, Zeynep, Bitzer, Julia, Halama, Niels, Huang, Zhiqin, Zapatka, Marc, Schneeweiss, Andreas, Jäger, Dirk, Zörnig, Inka
Publicado 2016

Association of mutation signature effectuating processes with mutation hotspots in driver genes and non-coding regions

por Wong, John K. L., Aichmüller, Christian, Schulze, Markus, Hlevnjak, Mario, Elgaafary, Shaymaa, Lichter, Peter, Zapatka, Marc
Publicado 2022

scSNPdemux: a sensitive demultiplexing pipeline using single nucleotide polymorphisms for improved pooled single-cell RNA sequencing analysis

por Wong, John K. L., Jassowicz, Lena, Herold-Mende, Christel, Seiffert, Martina, Mallm, Jan-Philipp, Lichter, Peter, Zapatka, Marc
Publicado 2023

Divergent mechanisms underlie Smad4-mediated positive regulation of the three genes encoding the basement membrane component laminin-332 (laminin-5)

por Zboralski, Dirk, Böckmann, Miriam, Zapatka, Marc, Hoppe, Sabine, Schöneck, Anna, Hahn, Stephan A, Schmiegel, Wolff, Schwarte-Waldhoff, Irmgard
Publicado 2008

High-level inducible Smad4-reexpression in the cervical cancer cell line C4-II is associated with a gene expression profile that predicts a preferential role of Smad4 in extracellu...

por Klein-Scory, Susanne, Zapatka, Marc, Eilert-Micus, Christina, Hoppe, Sabine, Schwarz, Elisabeth, Schmiegel, Wolff, Hahn, Stephan A, Schwarte-Waldhoff, Irmgard
Publicado 2007

qPCR in gastrointestinal stromal tumors: Evaluation of reference genes and expression analysis of KIT and the alternative receptor tyrosine kinases FLT3, CSF1-R, PDGFRB, MET and AX...

por Fassunke, Jana, Blum, Marie-Christine, Schildhaus, Hans-Ulrich, Zapatka, Marc, Brors, Benedikt, Künstlinger, Helen, Büttner, Reinhard, Wardelmann, Eva, Merkelbach-Bruse, Sabine
Publicado 2010

Clonal evolution in chronic lymphocytic leukemia is scant in relapsed but accelerated in refractory cases after chemo(immune) therapy

por Zapatka, Marc, Tausch, Eugen, Öztürk, Selcen, Yosifov, Deyan Yordanov, Seiffert, Martina, Zenz, Thorsten, Schneider, Christof, Bloehdorn, Johannes, Döhner, Hartmut, Mertens, Daniel, Lichter, Peter, Stilgenbauer, Stephan
Publicado 2021

Author Correction: The landscape of viral associations in human cancers

por Zapatka, Marc, Borozan, Ivan, Brewer, Daniel S., Iskar, Murat, Grundhoff, Adam, Alawi, Malik, Desai, Nikita, Sültmann, Holger, Moch, Holger, Cooper, Colin S., Eils, Roland, Ferretti, Vincent, Lichter, Peter
Publicado 2023

The landscape of viral associations in human cancers

por Zapatka, Marc, Borozan, Ivan, Brewer, Daniel S., Iskar, Murat, Grundhoff, Adam, Alawi, Malik, Desai, Nikita, Sültmann, Holger, Moch, Holger, Cooper, Colin S., Eils, Roland, Ferretti, Vincent, Lichter, Peter
Publicado 2020

Comparative parallel multi-omics analysis during the induction of pluripotent and trophectoderm states

por Jaber, Mohammad, Radwan, Ahmed, Loyfer, Netanel, Abdeen, Mufeed, Sebban, Shulamit, Khatib, Areej, Yassen, Hazar, Kolb, Thorsten, Zapatka, Marc, Makedonski, Kirill, Ernst, Aurelie, Kaplan, Tommy, Buganim, Yosef
Publicado 2022

Monitoring CSF Proteome Alterations in Amyotrophic Lateral Sclerosis: Obstacles and Perspectives in Translating a Novel Marker Panel to the Clinic

por von Neuhoff, Nils, Oumeraci, Tonio, Wolf, Thomas, Kollewe, Katja, Bewerunge, Peter, Neumann, Boris, Brors, Benedikt, Bufler, Johannes, Wurster, Ulrich, Schlegelberger, Brigitte, Dengler, Reinhard, Zapatka, Marc, Petri, Susanne
Publicado 2012

Coverage Bias and Sensitivity of Variant Calling for Four Whole-genome Sequencing Technologies

por Rieber, Nora, Zapatka, Marc, Lasitschka, Bärbel, Jones, David, Northcott, Paul, Hutter, Barbara, Jäger, Natalie, Kool, Marcel, Taylor, Michael, Lichter, Peter, Pfister, Stefan, Wolf, Stephan, Brors, Benedikt, Eils, Roland
Publicado 2013