Elucidation of complexity and prediction of interactions in microbial communities

por Zuñiga, Cristal, Zaramela, Livia, Zengler, Karsten
Publicado 2017

synDNA—a Synthetic DNA Spike-in Method for Absolute Quantification of Shotgun Metagenomic Sequencing

por Zaramela, Livia S., Tjuanta, Megan, Moyne, Oriane, Neal, Maxwell, Zengler, Karsten
Publicado 2022

Transcription Start Site Associated RNAs (TSSaRNAs) Are Ubiquitous in All Domains of Life

por Zaramela, Livia S., Vêncio, Ricardo Z. N., ten-Caten, Felipe, Baliga, Nitin S., Koide, Tie
Publicado 2014

Development of New Modular Genetic Tools for Engineering the Halophilic Archaeon Halobacterium salinarum

por Silva-Rocha, Rafael, Pontelli, Marjorie Cornejo, Furtado, Gilvan Pessoa, Zaramela, Livia Soares, Koide, Tie
Publicado 2015

Improving saliva shotgun metagenomics by chemical host DNA depletion

por Marotz, Clarisse A., Sanders, Jon G., Zuniga, Cristal, Zaramela, Livia S., Knight, Rob, Zengler, Karsten
Publicado 2018

Establishing microbial composition measurement standards with reference frames

por Morton, James T., Marotz, Clarisse, Washburne, Alex, Silverman, Justin, Zaramela, Livia S., Edlund, Anna, Zengler, Karsten, Knight, Rob
Publicado 2019

Metabolic capability and in situ activity of microorganisms in an oil reservoir

por Liu, Yi-Fan, Galzerani, Daniela Domingos, Mbadinga, Serge Maurice, Zaramela, Livia S., Gu, Ji-Dong, Mu, Bo-Zhong, Zengler, Karsten
Publicado 2018

Internal RNAs overlapping coding sequences can drive the production of alternative proteins in archaea

por Ten-Caten, Felipe, Vêncio, Ricardo Z. N., Lorenzetti, Alan Péricles R., Zaramela, Livia Soares, Santana, Ana Carolina, Koide, Tie
Publicado 2018

Guild and Niche Determination Enable Targeted Alteration of the Microbiome

por Moyne, Oriane, Al-Bassam, Mahmoud, Lieng, Chloe, Thiruppathy, Deepan, Norton, Grant J., Kumar, Manish, Haddad, Eli, Zaramela, Livia S., Zengler, Karsten
Publicado 2023

Sense overlapping transcripts in IS1341-type transposase genes are functional non-coding RNAs in archaea

por Gomes-Filho, José Vicente, Zaramela, Livia Soares, Italiani, Valéria Cristina da Silva, Baliga, Nitin S, Vêncio, Ricardo Z N, Koide, Tie
Publicado 2015

Optimization of carbon and energy utilization through differential translational efficiency

por Al-Bassam, Mahmoud M., Kim, Ji-Nu, Zaramela, Livia S., Kellman, Benjamin P., Zuniga, Cristal, Wozniak, Jacob M., Gonzalez, David J., Zengler, Karsten
Publicado 2018

Zebra: Static and Dynamic Genome Cover Thresholds with Overlapping References

por Hakim, Daniel, Wandro, Stephen, Zengler, Karsten, Zaramela, Livia S., Nowinski, Brent, Swafford, Austin, Zhu, Qiyun, Song, Se Jin, Gonzalez, Antonio, McDonald, Daniel, Knight, Rob
Publicado 2022

Combining Functional Genomics and Whole-Genome Sequencing to Detect Antibiotic Resistance Genes in Bacterial Strains Co-Occurring Simultaneously in a Brazilian Hospital

por Borelli, Tiago Cabral, Lovate, Gabriel Lencioni, Scaranello, Ana Flavia Tonelli, Ribeiro, Lucas Ferreira, Zaramela, Livia, Pereira-dos-Santos, Felipe Marcelo, Silva-Rocha, Rafael, Guazzaroni, María-Eugenia
Publicado 2021

Genomic and Transcriptomic Evidence Supports Methane Metabolism in Archaeoglobi

por Liu, Yi-Fan, Chen, Jing, Zaramela, Livia S., Wang, Li-Ying, Mbadinga, Serge Maurice, Hou, Zhao-Wei, Wu, Xiao-Lin, Gu, Ji-Dong, Zengler, Karsten, Mu, Bo-Zhong
Publicado 2020

Interplay of Staphylococcal and Host Proteases Promotes Skin Barrier Disruption in Netherton Syndrome

por Williams, Michael R., Cau, Laura, Wang, Yichen, Kaul, Drishti, Sanford, James A., Zaramela, Livia S., Khalil, Shadi, Butcher, Anna M., Zengler, Karsten, Horswill, Alexander R., Dupont, Christopher L., Hovnanian, Alain, Gallo, Richard L.
Publicado 2020

Transcriptional profiling of lung macrophages identifies a predictive signature for inflammatory lung disease in preterm infants

por Sahoo, Debashis, Zaramela, Livia S., Hernandez, Gilberto E., Mai, Uyen, Taheri, Sahar, Dang, Dharanidhar, Stouch, Ashley N., Medal, Rachel M., McCoy, Alyssa M., Aschner, Judy L., Blackwell, Timothy S., Zengler, Karsten, Prince, Lawrence S.
Publicado 2020

The Ubiquitous Human Skin Commensal Staphylococcus hominis Protects against Opportunistic Pathogens

por Severn, Morgan M., Williams, Michael R., Shahbandi, Ali, Bunch, Zoie L., Lyon, Laurie M., Nguyen, Amber, Zaramela, Livia S., Todd, Daniel A., Zengler, Karsten, Cech, Nadja B., Gallo, Richard L., Horswill, Alexander R.
Publicado 2022

Gut bacteria responding to dietary change encode sialidases that exhibit preference for red meat-associated carbohydrates

por Zaramela, Livia S., Martino, Cameron, Alisson-Silva, Frederico, Rees, Steven D., Diaz, Sandra L., Chuzel, Léa, Ganatra, Mehul B., Taron, Christopher H., Secrest, Patrick, Zuñiga, Cristal, Huang, Jianbo, Siegel, Dionicio, Chang, Geoffrey, Varki, Ajit, Zengler, Karsten
Publicado 2019

A Genome-Scale Atlas Reveals Complex Interplay of Transcription and Translation in an Archaeon

por Lorenzetti, Alan P. R., Kusebauch, Ulrike, Zaramela, Lívia S., Wu, Wei-Ju, de Almeida, João P. P., Turkarslan, Serdar, L. G. de Lomana, Adrián, Gomes-Filho, José V., Vêncio, Ricardo Z. N., Moritz, Robert L., Koide, Tie, Baliga, Nitin S.
Publicado 2023

A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities

por Shaffer, Justin P., Marotz, Clarisse, Belda-Ferre, Pedro, Martino, Cameron, Wandro, Stephen, Estaki, Mehrbod, Salido, Rodolfo A., Carpenter, Carolina S., Zaramela, Livia S., Minich, Jeremiah J., Bryant, MacKenzie, Sanders, Karenina, Fraraccio, Serena, Ackermann, Gail, Humphrey, Gregory, Swafford, Austin D., Miller-Montgomery, Sandrine, Knight, Rob
Publicado 2020