Bacterial adaptation through distributed sensing of metabolic fluxes

por Kotte, Oliver, Zaugg, Judith B, Heinemann, Matthias
Publicado 2010

SNPhood: investigate, quantify and visualise the epigenomic neighbourhood of SNPs using NGS data

por Arnold, Christian, Bhat, Pooja, Zaugg, Judith B.
Publicado 2016

Backmasking in the yeast genome: encoding overlapping information for protein-coding and RNA degradation

por Cakiroglu, S. Aylin, Zaugg, Judith B., Luscombe, Nicholas M.
Publicado 2016

Predictive features of gene expression variation reveal mechanistic link with differential expression

por Sigalova, Olga M, Shaeiri, Amirreza, Forneris, Mattia, Furlong, Eileen EM, Zaugg, Judith B
Publicado 2020

Genomic Rewiring of SOX2 Chromatin Interaction Network during Differentiation of ESCs to Postmitotic Neurons

por Bunina, Daria, Abazova, Nade, Diaz, Nichole, Noh, Kyung-Min, Krijgsveld, Jeroen, Zaugg, Judith B.
Publicado 2020

Mechanistic insights into transcription factor cooperativity and its impact on protein-phenotype interactions

por Ibarra, Ignacio L., Hollmann, Nele M., Klaus, Bernd, Augsten, Sandra, Velten, Britta, Hennig, Janosch, Zaugg, Judith B.
Publicado 2020

PB1790: LOOKING ‘BENEATH’ THE SURFACE: PROTEOMICS AND GLYCIPROTEOMICS REVEAL NOVEL TARGETS FOR CAR-T CELL THERAPIES IN ACUTE MYELOID LEUKEMIA (AML)

por Brysting, Josephine, Liu, Yi, Frenz, Joris, Schwarz, Jennifer, Sauer, Tim, Schmitt, Michael, Raffel, Simon, Renders, Simon, Zaugg, Judith B., Jayavely, Ashok, Müller-Tidow, Carsten
Publicado 2023

Role of histone modifications and early termination in pervasive transcription and antisense-mediated gene silencing in yeast

por Castelnuovo, Manuele, Zaugg, Judith B., Guffanti, Elisa, Maffioletti, Andrea, Camblong, Jurgi, Xu, Zhenyu, Clauder-Münster, Sandra, Steinmetz, Lars M., Luscombe, Nicholas M., Stutz, Françoise
Publicado 2014

Haplotype-specific MAPT exon 3 expression regulated by common intronic polymorphisms associated with Parkinsonian disorders

por Lai, Mang Ching, Bechy, Anne-Laure, Denk, Franziska, Collins, Emma, Gavriliouk, Maria, Zaugg, Judith B., Ryan, Brent J., Wade-Martins, Richard, Caffrey, Tara M.
Publicado 2017

TET2 binding to enhancers facilitates transcription factor recruitment in hematopoietic cells

por Rasmussen, Kasper D., Berest, Ivan, Keβler, Sandra, Nishimura, Koutarou, Simón-Carrasco, Lucía, Vassiliou, George S., Pedersen, Marianne T., Christensen, Jesper, Zaugg, Judith B., Helin, Kristian
Publicado 2019

Integrative Single-Cell RNA-Seq and ATAC-Seq Analysis of Human Developmental Hematopoiesis

por Ranzoni, Anna Maria, Tangherloni, Andrea, Berest, Ivan, Riva, Simone Giovanni, Myers, Brynelle, Strzelecka, Paulina M., Xu, Jiarui, Panada, Elisa, Mohorianu, Irina, Zaugg, Judith B., Cvejic, Ana
Publicado 2021

Comparative chromatin accessibility upon BDNF stimulation delineates neuronal regulatory elements

por Ibarra, Ignacio L, Ratnu, Vikram S, Gordillo, Lucia, Hwang, In‐Young, Mariani, Luca, Weinand, Kathryn, Hammarén, Henrik M, Heck, Jennifer, Bulyk, Martha L, Savitski, Mikhail M, Zaugg, Judith B, Noh, Kyung‐Min
Publicado 2022

Remodeling of active endothelial enhancers is associated with aberrant gene-regulatory networks in pulmonary arterial hypertension

por Reyes-Palomares, Armando, Gu, Mingxia, Grubert, Fabian, Berest, Ivan, Sa, Silin, Kasowski, Maya, Arnold, Christian, Shuai, Mao, Srivas, Rohith, Miao, Simon, Li, Dan, Snyder, Michael P., Rabinovitch, Marlene, Zaugg, Judith B.
Publicado 2020

GRaNIE and GRaNPA: inference and evaluation of enhancer‐mediated gene regulatory networks

por Kamal, Aryan, Arnold, Christian, Claringbould, Annique, Moussa, Rim, Servaas, Nila H, Kholmatov, Maksim, Daga, Neha, Nogina, Daria, Mueller‐Dott, Sophia, Reyes‐Palomares, Armando, Palla, Giovanni, Sigalova, Olga, Bunina, Daria, Pabst, Caroline, Zaugg, Judith B
Publicado 2023

Identifying a novel role for the master regulator Tal1 in the Endothelial to Hematopoietic Transition

por Serina Secanechia, Yasmin Natalia, Bergiers, Isabelle, Rogon, Matt, Arnold, Christian, Descostes, Nicolas, Le, Stephanie, López-Anguita, Natalia, Ganter, Kerstin, Kapsali, Chrysi, Bouilleau, Lea, Gut, Aaron, Uzuotaite, Auguste, Aliyeva, Ayshan, Zaugg, Judith B., Lancrin, Christophe
Publicado 2022

Convolutional networks for supervised mining of molecular patterns within cellular context

por de Teresa-Trueba, Irene, Goetz, Sara K., Mattausch, Alexander, Stojanovska, Frosina, Zimmerli, Christian E., Toro-Nahuelpan, Mauricio, Cheng, Dorothy W. C., Tollervey, Fergus, Pape, Constantin, Beck, Martin, Diz-Muñoz, Alba, Kreshuk, Anna, Mahamid, Julia, Zaugg, Judith B.
Publicado 2023

Landscape of cohesin-mediated chromatin loops in the human genome

por Grubert, Fabian, Srivas, Rohith, Spacek, Damek  V, Kasowski, Maya, Ruiz-Velasco, Mariana, Sinnott-Armstrong, Nasa, Greenside, Peyton, Narasimha, Anil, Liu, Qing, Geller, Benjamin, Sanghi, Akshay, Kulik, Michael, Sa, Silin, Rabinovitch, Marlene, Kundaje, Anshul, Dalton, Stephen, Zaugg, Judith B., Snyder, Michael
Publicado 2020

Operation of a TCA cycle subnetwork in the mammalian nucleus

por Kafkia, Eleni, Andres-Pons, Amparo, Ganter, Kerstin, Seiler, Markus, Smith, Tom S., Andrejeva, Anna, Jouhten, Paula, Pereira, Filipa, Franco, Catarina, Kuroshchenkova, Anna, Leone, Sergio, Sawarkar, Ritwick, Boston, Rebecca, Thaventhiran, James, Zaugg, Judith B., Lilley, Kathryn S., Lancrin, Christophe, Beck, Martin, Patil, Kiran Raosaheb
Publicado 2022

P1206: A SINGLE-CELL MULTI-OMIC AND SPATIAL ATLAS OF NODAL B CELL NON-HODGKIN LYMPHOMAS REVEALS PLASTICITY IN B CELL MATURATION AS A DRIVER OF INTRATUMOR HETEROGENEITY

por Fitzgerald, Donnacha, Kibler, Artur, Baertsch, Marc-A., Roider, Tobias, Vohringer, Harald, Horlova, Anastasiia, Mathioudaki, Anna, Budeus, Bettina, Knoll, Mareike, Chung, Erin, Mammen, Johannes, Caille, Leandra, Passerini, Verena, Czernilofsky, Felix, LI, Linsha, Weigert, Oliver, Zaugg, Judith B., Nolan, Gary P., Seifert, Marc, Huber, Wolfgang, Dietrich, Sacha
Publicado 2023

Cell-specific proteome analyses of human bone marrow reveal molecular features of age-dependent functional decline

por Hennrich, Marco L., Romanov, Natalie, Horn, Patrick, Jaeger, Samira, Eckstein, Volker, Steeples, Violetta, Ye, Fei, Ding, Ximing, Poisa-Beiro, Laura, Lai, Mang Ching, Lang, Benjamin, Boultwood, Jacqueline, Luft, Thomas, Zaugg, Judith B., Pellagatti, Andrea, Bork, Peer, Aloy, Patrick, Gavin, Anne-Claude, Ho, Anthony D.
Publicado 2018