SNIT: SNP identification for strain typing

por Vijaya Satya, Ravi, Zavaljevski, Nela, Reifman, Jaques
Publicado 2011

A new strategy to reduce allelic bias in RNA-Seq readmapping

por Vijaya Satya, Ravi, Zavaljevski, Nela, Reifman, Jaques
Publicado 2012

QuartetS: a fast and accurate algorithm for large-scale orthology detection

por Yu, Chenggang, Zavaljevski, Nela, Desai, Valmik, Reifman, Jaques
Publicado 2011

A high-throughput pipeline for designing microarray-based pathogen diagnostic assays

por Vijaya Satya, Ravi, Zavaljevski, Nela, Kumar, Kamal, Reifman, Jaques
Publicado 2008

A high-throughput pipeline for the design of real-time PCR signatures

por Vijaya Satya, Ravi, Kumar, Kamal, Zavaljevski, Nela, Reifman, Jaques
Publicado 2010

The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation

por Yu, Chenggang, Zavaljevski, Nela, Desai, Valmik, Johnson, Seth, Stevens, Fred J, Reifman, Jaques
Publicado 2008

DBSecSys 2.0: a database of Burkholderia mallei and Burkholderia pseudomallei secretion systems

por Memišević, Vesna, Kumar, Kamal, Zavaljevski, Nela, DeShazer, David, Wallqvist, Anders, Reifman, Jaques
Publicado 2016

PSPP: A Protein Structure Prediction Pipeline for Computing Clusters

por Lee, Michael S., Bondugula, Rajkumar, Desai, Valmik, Zavaljevski, Nela, Yeh, In-Chul, Wallqvist, Anders, Reifman, Jaques
Publicado 2009

DBSecSys: a database of Burkholderia mallei secretion systems

por Memišević, Vesna, Kumar, Kamal, Cheng, Li, Zavaljevski, Nela, DeShazer, David, Wallqvist, Anders, Reifman, Jaques
Publicado 2014

In silico microarray probe design for diagnosis of multiple pathogens

por Vijaya Satya, Ravi, Zavaljevski, Nela, Kumar, Kamal, Bode, Elizabeth, Padilla, Susana, Wasieloski, Leonard, Geyer, Jeanne, Reifman, Jaques
Publicado 2008

Mechanisms of action of Coxiella burnetii effectors inferred from host-pathogen protein interactions

por Wallqvist, Anders, Wang, Hao, Zavaljevski, Nela, Memišević, Vesna, Kwon, Keehwan, Pieper, Rembert, Rajagopala, Seesandra V., Reifman, Jaques
Publicado 2017

Mining Host-Pathogen Protein Interactions to Characterize Burkholderia mallei Infectivity Mechanisms

por Memišević, Vesna, Zavaljevski, Nela, Rajagopala, Seesandra V., Kwon, Keehwan, Pieper, Rembert, DeShazer, David, Reifman, Jaques, Wallqvist, Anders
Publicado 2015

AGeS: A Software System for Microbial Genome Sequence Annotation

por Kumar, Kamal, Desai, Valmik, Cheng, Li, Khitrov, Maxim, Grover, Deepak, Satya, Ravi Vijaya, Yu, Chenggang, Zavaljevski, Nela, Reifman, Jaques
Publicado 2011

Using host-pathogen protein interactions to identify and characterize Francisella tularensis virulence factors

por Wallqvist, Anders, Memišević, Vesna, Zavaljevski, Nela, Pieper, Rembert, Rajagopala, Seesandra V., Kwon, Keehwan, Yu, Chenggang, Hoover, Timothy A., Reifman, Jaques
Publicado 2015

Novel Burkholderia mallei Virulence Factors Linked to Specific Host-Pathogen Protein Interactions

por Memišević, Vesna, Zavaljevski, Nela, Pieper, Rembert, Rajagopala, Seesandra V., Kwon, Keehwan, Townsend, Katherine, Yu, Chenggang, Yu, Xueping, DeShazer, David, Reifman, Jaques, Wallqvist, Anders
Publicado 2013

Composition and variation of respiratory microbiota in healthy military personnel

por Hang, Jun, Zavaljevski, Nela, Yang, Yu, Desai, Valmik, Ruck, Richard C., Macareo, Louis R., Jarman, Richard G., Reifman, Jaques, Kuschner, Robert A., Keiser, Paul B.
Publicado 2017

16S rRNA gene pyrosequencing of reference and clinical samples and investigation of the temperature stability of microbiome profiles

por Hang, Jun, Desai, Valmik, Zavaljevski, Nela, Yang, Yu, Lin, Xiaoxu, Satya, Ravi Vijaya, Martinez, Luis J, Blaylock, Jason M, Jarman, Richard G, Thomas, Stephen J, Kuschner, Robert A
Publicado 2014

Phenotypic Characterization of a Novel Virulence-Factor Deletion Strain of Burkholderia mallei That Provides Partial Protection against Inhalational Glanders in Mice

por Bozue, Joel A., Chaudhury, Sidhartha, Amemiya, Kei, Chua, Jennifer, Cote, Christopher K., Toothman, Ronald G., Dankmeyer, Jennifer L., Klimko, Christopher P., Wilhelmsen, Catherine L., Raymond, Jolynn W., Zavaljevski, Nela, Reifman, Jaques, Wallqvist, Anders
Publicado 2016