Asymmetric Conservation within Pairs of Co-Occurred Motifs Mediates Weak Direct Binding of Transcription Factors in ChIP-Seq Data

por Levitsky, Victor, Oshchepkov, Dmitry, Zemlyanskaya, Elena, Merkulova, Tatyana
Publicado 2020

Shaping Ethylene Response: The Role of EIN3/EIL1 Transcription Factors

por Dolgikh, Vladislav A., Pukhovaya, Evgeniya M., Zemlyanskaya, Elena V.
Publicado 2019

Mechanisms of stress response in the root stem cell niche

por Ubogoeva, Elena V, Zemlyanskaya, Elena V, Xu, Jian, Mironova, Victoria
Publicado 2021

Deciphering Auxin-Ethylene Crosstalk at a Systems Level

por Zemlyanskaya, Elena V., Omelyanchuk, Nadya A., Ubogoeva, Elena V., Mironova, Victoria V.
Publicado 2018

The Interplay of Chromatin Landscape and DNA-Binding Context Suggests Distinct Modes of EIN3 Regulation in Arabidopsis thaliana

por Zemlyanskaya, Elena V., Levitsky, Victor G., Oshchepkov, Dmitry Y., Grosse, Ivo, Mironova, Victoria V.
Publicado 2017

Web-MCOT Server for Motif Co-Occurrence Search in ChIP-Seq Data

por Levitsky, Victor G., Mukhin, Alexey M., Oshchepkov, Dmitry Yu., Zemlyanskaya, Elena V., Lashin, Sergey A.
Publicado 2022

A single ChIP-seq dataset is sufficient for comprehensive analysis of motifs co-occurrence with MCOT package

por Levitsky, Victor, Zemlyanskaya, Elena, Oshchepkov, Dmitry, Podkolodnaya, Olga, Ignatieva, Elena, Grosse, Ivo, Mironova, Victoria, Merkulova, Tatyana
Publicado 2019

Salicylic Acid in Root Growth and Development

por Bagautdinova, Zulfira Z., Omelyanchuk, Nadya, Tyapkin, Aleksandr V., Kovrizhnykh, Vasilina V., Lavrekha, Viktoriya V., Zemlyanskaya, Elena V.
Publicado 2022

Fold-Change-Specific Enrichment Analysis (FSEA): Quantification of Transcriptional Response Magnitude for Functional Gene Groups

por Wiebe, Daniil S., Omelyanchuk, Nadezhda A., Mukhin, Aleksei M., Grosse, Ivo, Lashin, Sergey A., Zemlyanskaya, Elena V., Mironova, Victoria V.
Publicado 2020

Characterization of BisI Homologs

por Xu, Shuang-yong, Zemlyanskaya, Elena V., Gonchar, Danila A., Sun, Zhiyi, Weigele, Peter, Fomenkov, Alexey, Degtyarev, Sergey Kh, Roberts, Richard J.
Publicado 2021

Click chemistry-based tracking reveals putative cell wall-located auxin binding sites in expanding cells

por Mravec, Jozef, Kračun, Stjepan K., Zemlyanskaya, Elena, Rydahl, Maja G., Guo, Xiaoyuan, Pičmanová, Martina, Sørensen, Kasper K., Růžička, Kamil, Willats, William G. T.
Publicado 2017

CisCross: A gene list enrichment analysis to predict upstream regulators in Arabidopsis thaliana

por Lavrekha, Viktoriya V., Levitsky, Victor G., Tsukanov, Anton V., Bogomolov, Anton G., Grigorovich, Dmitry A., Omelyanchuk, Nadya, Ubogoeva, Elena V., Zemlyanskaya, Elena V., Mironova, Victoria
Publicado 2022

Plant_SNP_TATA_Z-Tester: A Web Service That Unequivocally Estimates the Impact of Proximal Promoter Mutations on Plant Gene Expression

por Rasskazov, Dmitry, Chadaeva, Irina, Sharypova, Ekaterina, Zolotareva, Karina, Khandaev, Bato, Ponomarenko, Petr, Podkolodnyy, Nikolay, Tverdokhleb, Natalya, Vishnevsky, Oleg, Bogomolov, Anton, Podkolodnaya, Olga, Savinkova, Ludmila, Zemlyanskaya, Elena, Golubyatnikov, Vadimir, Kolchanov, Nikolay, Ponomarenko, Mikhail
Publicado 2022