Prediction of enhancer-promoter interactions via natural language processing

por Zeng, Wanwen, Wu, Mengmeng, Jiang, Rui
Publicado 2018

EnDisease: a manually curated database for enhancer-disease associations

por Zeng, Wanwen, Min, Xu, Jiang, Rui
Publicado 2019

Mimvec: a deep learning approach for analyzing the human phenome

por Gan, Mingxin, Li, Wenran, Zeng, Wanwen, Wang, Xiaojian, Jiang, Rui
Publicado 2017

Chromatin accessibility prediction via convolutional long short-term memory networks with k-mer embedding

por Min, Xu, Zeng, Wanwen, Chen, Ning, Chen, Ting, Jiang, Rui
Publicado 2017

EpiGePT: a Pretrained Transformer model for epigenomics

por Gao, Zijing, Liu, Qiao, Zeng, Wanwen, Wong, Wing Hung, Jiang, Rui
Publicado 2023

HiChIPdb: a comprehensive database of HiChIP regulatory interactions

por Zeng, Wanwen, Liu, Qiao, Yin, Qijin, Jiang, Rui, Wong, Wing Hung
Publicado 2022

dbWGFP: a database and web server of human whole-genome single nucleotide variants and their functional predictions

por Wu, Jiaxin, Wu, Mengmeng, Li, Lianshuo, Liu, Zhuo, Zeng, Wanwen, Jiang, Rui
Publicado 2016

Predicting enhancers with deep convolutional neural networks

por Min, Xu, Zeng, Wanwen, Chen, Shengquan, Chen, Ning, Chen, Ting, Jiang, Rui
Publicado 2017

SilencerDB: a comprehensive database of silencers

por Zeng, Wanwen, Chen, Shengquan, Cui, Xuejian, Chen, Xiaoyang, Gao, Zijing, Jiang, Rui
Publicado 2020

Applications of transformer-based language models in bioinformatics: a survey

por Zhang, Shuang, Fan, Rui, Liu, Yuti, Chen, Shuang, Liu, Qiao, Zeng, Wanwen
Publicado 2023

DC3 is a method for deconvolution and coupled clustering from bulk and single-cell genomics data

por Zeng, Wanwen, Chen, Xi, Duren, Zhana, Wang, Yong, Jiang, Rui, Wong, Wing Hung
Publicado 2019

Integrative analysis of single-cell genomics data by coupled nonnegative matrix factorizations

por Duren, Zhana, Chen, Xi, Zamanighomi, Mahdi, Zeng, Wanwen, Satpathy, Ansuman T., Chang, Howard Y., Wang, Yong, Wong, Wing Hung
Publicado 2018