HiC-DC+ enables systematic 3D interaction calls and differential analysis for Hi-C and HiChIP

por Sahin, Merve, Wong, Wilfred, Zhan, Yingqian, Van Deynze, Kinsey, Koche, Richard, Leslie, Christina S.
Publicado 2021

Fostering bioinformatics education through skill development of professors: Big Genomic Data Skills Training for Professors

por Zhan, Yingqian Ada, Wray, Charles Gregory, Namburi, Sandeep, Glantz, Spencer T., Laubenbacher, Reinhard, Chuang, Jeffrey H.
Publicado 2019

WEE1 inhibition enhances the antitumor immune response to PD-L1 blockade by the concomitant activation of STING and STAT1 pathways in SCLC

por Taniguchi, Hirokazu, Caeser, Rebecca, Chavan, Shweta S., Zhan, Yingqian A., Chow, Andrew, Manoj, Parvathy, Uddin, Fathema, Kitai, Hidenori, Qu, Rui, Hayatt, Omar, Shah, Nisargbhai S., Villalonga, Álvaro Quintanal, Allaj, Viola, Nguyen, Evelyn M., Chan, Joseph, Michel, Adam O., Mukae, Hiroshi, de Stanchina, Elisa, Rudin, Charles M., Sen, Triparna
Publicado 2022

ChromaFold predicts the 3D contact map from single-cell chromatin accessibility

por Gao, Vianne R., Yang, Rui, Das, Arnav, Luo, Renhe, Luo, Hanzhi, McNally, Dylan R., Karagiannidis, Ioannis, Rivas, Martin A., Wang, Zhong-Min, Barisic, Darko, Karbalayghareh, Alireza, Wong, Wilfred, Zhan, Yingqian A., Chin, Christopher R., Noble, William, Bilmes, Jeff A., Apostolou, Effie, Kharas, Michael G., Béguelin, Wendy, Viny, Aaron D., Huangfu, Danwei, Rudensky, Alexander Y., Melnick, Ari M., Leslie, Christina S.
Publicado 2023

Comprehensive molecular characterization of lung tumors implicates AKT and MYC signaling in adenocarcinoma to squamous cell transdifferentiation

por Quintanal-Villalonga, Alvaro, Taniguchi, Hirokazu, Zhan, Yingqian A., Hasan, Maysun M., Chavan, Shweta S., Meng, Fanli, Uddin, Fathema, Allaj, Viola, Manoj, Parvathy, Shah, Nisargbhai S., Chan, Joseph M., Ciampricotti, Metamia, Chow, Andrew, Offin, Michael, Ray-Kirton, Jordana, Egger, Jacklynn D., Bhanot, Umesh K., Linkov, Irina, Asher, Marina, Roehrl, Michael H., Ventura, Katia, Qiu, Juan, de Stanchina, Elisa, Chang, Jason C., Rekhtman, Natasha, Houck-Loomis, Brian, Koche, Richard P., Yu, Helena A., Sen, Triparna, Rudin, Charles M.
Publicado 2021