Editorial: Applications of long-read sequencing in plant genomics and transcriptomics

por Daszkowska-Golec, Agata, Mascher, Martin, Zhang, Runxuan
Publicado 2023

The value of genotype-specific reference for transcriptome analyses in barley

por Guo, Wenbin, Coulter, Max, Waugh, Robbie, Zhang, Runxuan
Publicado 2022

ProtView: A Versatile Tool for In Silico Protease Evaluation and Selection in a Proteomic and Proteogenomic Context

por Puliasis, Sophia S., Lewandowska, Dominika, Hemsley, Piers A., Zhang, Runxuan
Publicado 2023

Identification and Characterization of miRNA Transcriptome in Potato by High-Throughput Sequencing

por Zhang, Runxuan, Marshall, David, Bryan, Glenn J., Hornyik, Csaba
Publicado 2013

Application of a Sensitive and Reproducible Label-Free Proteomic Approach to Explore the Proteome of Individual Meiotic-Phase Barley Anthers

por Lewandowska, Dominika, Zhang, Runxuan, Colas, Isabelle, Uzrek, Nicola, Waugh, Robbie
Publicado 2019

TSIS: an R package to infer alternative splicing isoform switches for time-series data

por Guo, Wenbin, Calixto, Cristiane P G, Brown, John W S, Zhang, Runxuan
Publicado 2017

The proteome of developing barley anthers during meiotic prophase I

por Lewandowska, Dominika, Orr, Jamie, Schreiber, Miriam, Colas, Isabelle, Ramsay, Luke, Zhang, Runxuan, Waugh, Robbie
Publicado 2021

Effects of Graphene Oxide on Plant Growth: A Review

por Yang, Yan, Zhang, Runxuan, Zhang, Xiao, Chen, Zezhong, Wang, Haiyan, Li, Paul Chi Hang
Publicado 2022

Effects of graphene on morphology, microstructure and transcriptomic profiling of Pinus tabuliformis Carr. roots

por Zhang, Xiao, Cao, Huifen, Wang, Haiyan, Zhang, Runxuan, Jia, Haikuan, Huang, Jingting, Zhao, Jianguo, Yao, Jianzhong
Publicado 2021

Phytophthora capsici-tomato interaction features dramatic shifts in gene expression associated with a hemi-biotrophic lifestyle

por Jupe, Julietta, Stam, Remco, Howden, Andrew JM, Morris, Jenny A, Zhang, Runxuan, Hedley, Pete E, Huitema, Edgar
Publicado 2013

Evaluation and improvement of the regulatory inference for large co-expression networks with limited sample size

por Guo, Wenbin, Calixto, Cristiane P. G., Tzioutziou, Nikoleta, Lin, Ping, Waugh, Robbie, Brown, John W. S., Zhang, Runxuan
Publicado 2017

Illuminating the dark side of the human transcriptome with long read transcript sequencing

por Kuo, Richard I., Cheng, Yuanyuan, Zhang, Runxuan, Brown, John W. S., Smith, Jacqueline, Archibald, Alan L., Burt, David W.
Publicado 2020

3D RNA-seq: a powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists

por Guo, Wenbin, Tzioutziou, Nikoleta A, Stephen, Gordon, Milne, Iain, Calixto, Cristiane PG, Waugh, Robbie, Brown, John W. S., Zhang, Runxuan
Publicado 2020

Insight on Genes Affecting Tuber Development in Potato upon Potato spindle tuber viroid (PSTVd) Infection

por Katsarou, Konstantina, Wu, Yun, Zhang, Runxuan, Bonar, Nicola, Morris, Jenny, Hedley, Pete E., Bryan, Glenn J., Kalantidis, Kriton, Hornyik, Csaba
Publicado 2016

Cold-Dependent Expression and Alternative Splicing of Arabidopsis Long Non-coding RNAs

por Calixto, Cristiane P. G., Tzioutziou, Nikoleta A., James, Allan B., Hornyik, Csaba, Guo, Wenbin, Zhang, Runxuan, Nimmo, Hugh G., Brown, John W. S.
Publicado 2019

Downy Mildew effector HaRxL21 interacts with the transcriptional repressor TOPLESS to promote pathogen susceptibility

por Harvey, Sarah, Kumari, Priyanka, Lapin, Dmitry, Griebel, Thomas, Hickman, Richard, Guo, Wenbin, Zhang, Runxuan, Parker, Jane E., Beynon, Jim, Denby, Katherine, Steinbrenner, Jens
Publicado 2020

Potato miR828 Is Associated With Purple Tuber Skin and Flesh Color

por Bonar, Nicola, Liney, Michele, Zhang, Runxuan, Austin, Ceri, Dessoly, Jimmy, Davidson, Diane, Stephens, Jennifer, McDougall, Gordon, Taylor, Mark, Bryan, Glenn J., Hornyik, Csaba
Publicado 2018

How does temperature affect splicing events? Isoform switching of splicing factors regulates splicing of LATE ELONGATED HYPOCOTYL (LHY)

por James, Allan B., Calixto, Cristiane P.G., Tzioutziou, Nikoleta A., Guo, Wenbin, Zhang, Runxuan, Simpson, Craig G., Jiang, Wenying, Nimmo, Gillian A., Brown, John W.S., Nimmo, Hugh G.
Publicado 2018

Barley SIX-ROWED SPIKE3 encodes a putative Jumonji C-type H3K9me2/me3 demethylase that represses lateral spikelet fertility

por Bull, Hazel, Casao, M. Cristina, Zwirek, Monika, Flavell, Andrew J., Thomas, William T. B., Guo, Wenbin, Zhang, Runxuan, Rapazote-Flores, Paulo, Kyriakidis, Stylianos, Russell, Joanne, Druka, Arnis, McKim, Sarah M., Waugh, Robbie
Publicado 2017

AtRTD – a comprehensive reference transcript dataset resource for accurate quantification of transcript‐specific expression in Arabidopsis thaliana

por Zhang, Runxuan, Calixto, Cristiane P. G., Tzioutziou, Nikoleta A., James, Allan B., Simpson, Craig G., Guo, Wenbin, Marquez, Yamile, Kalyna, Maria, Patro, Rob, Eyras, Eduardo, Barta, Andrea, Nimmo, Hugh G., Brown, John W. S.
Publicado 2015