Panning for Long Noncoding RNAs

por Zhu, Shanshan, Zhang, Xiao-Ou, Yang, Li
Publicado 2013

Genome-wide analysis of polymerase III–transcribed Alu elements suggests cell-type–specific enhancer function

por Zhang, Xiao-Ou, Gingeras, Thomas R., Weng, Zhiping
Publicado 2019

Genetic and epigenetic features of promoters with ubiquitous chromatin accessibility support ubiquitous transcription of cell-essential genes

por Fan, Kaili, Moore, Jill E, Zhang, Xiao-ou, Weng, Zhiping
Publicado 2021

Gene expression profiling of non-polyadenylated RNA-seq across species

por Zhang, Xiao-Ou, Yin, Qing-Fei, Chen, Ling-Ling, Yang, Li
Publicado 2014

The temporal landscape of recursive splicing during Pol II transcription elongation in human cells

por Zhang, Xiao-Ou, Fu, Yu, Mou, Haiwei, Xue, Wen, Weng, Zhiping
Publicado 2018

CircRNA-derived pseudogenes

por Dong, Rui, Zhang, Xiao-Ou, Zhang, Yang, Ma, Xu-Kai, Chen, Ling-Ling, Yang, Li
Publicado 2016

Epigenetic and chromosomal features drive transposon insertion in Drosophila melanogaster

por Cao, Jichuan, Yu, Tianxiong, Xu, Bo, Hu, Zhongren, Zhang, Xiao-ou, Theurkauf, William E, Weng, Zhiping
Publicado 2023

Optimized RNA-targeting CRISPR/Cas13d technology outperforms shRNA in identifying functional circRNAs

por Zhang, Yang, Nguyen, Tuan M., Zhang, Xiao-Ou, Wang, Limei, Phan, Tin, Clohessy, John G., Pandolfi, Pier Paolo
Publicado 2021

BCL2 is a major regulator of haploidy maintenance in murine embryonic stem cells

por Sun, Shengyi, Zhao, Qin, Zhao, Yiding, Geng, Mengyang, Wang, Qing, Gao, Qian, Zhang, Xiao‐Ou, Zhang, Wenhao, Shuai, Ling
Publicado 2023

Diverse alternative back-splicing and alternative splicing landscape of circular RNAs

por Zhang, Xiao-Ou, Dong, Rui, Zhang, Yang, Zhang, Jia-Lin, Luo, Zheng, Zhang, Jun, Chen, Ling-Ling, Yang, Li
Publicado 2016

Integration of high-resolution promoter profiling assays reveals novel, cell type–specific transcription start sites across 115 human cell and tissue types

por Moore, Jill E., Zhang, Xiao-Ou, Elhajjajy, Shaimae I., Fan, Kaili, Pratt, Henry E., Reese, Fairlie, Mortazavi, Ali, Weng, Zhiping
Publicado 2022

Species-specific alternative splicing leads to unique expression of sno-lncRNAs

por Zhang, Xiao-Ou, Yin, Qing-Fei, Wang, Hai-Bin, Zhang, Yang, Chen, Tian, Zheng, Ping, Lu, Xuhua, Chen, Ling-Ling, Yang, Li
Publicado 2014

Comprehensive identification of alternative back-splicing in human tissue transcriptomes

por Zhang, Peng, Zhang, Xiao-Ou, Jiang, Tingting, Cai, Lingling, Huang, Xiao, Liu, Qi, Li, Dan, Lu, Aiping, Liu, Yan, Xue, Wen, Zhang, Peng, Weng, Zhiping
Publicado 2020

Human colorectal cancer-specific CCAT1-L lncRNA regulates long-range chromatin interactions at the MYC locus

por Xiang, Jian-Feng, Yin, Qing-Fei, Chen, Tian, Zhang, Yang, Zhang, Xiao-Ou, Wu, Zheng, Zhang, Shaofeng, Wang, Hai-Bin, Ge, Junhui, Lu, Xuhua, Yang, Li, Chen, Ling-Ling
Publicado 2014

PRMT5 activates AKT via methylation to promote tumor metastasis

por Huang, Lei, Zhang, Xiao-Ou, Rozen, Esteban J., Sun, Xiaomei, Sallis, Benjamin, Verdejo-Torres, Odette, Wigglesworth, Kim, Moon, Daniel, Huang, Tingting, Cavaretta, John P., Wang, Gang, Zhang, Lei, Shohet, Jason M., Lee, Mary M., Wu, Qiong
Publicado 2022

Mitochondrial DNA Stress Signalling Protects the Nuclear Genome

por Wu, Zheng, Oeck, Sebastian, West, A. Phillip, Mangalhara, Kailash C., Sainz, Alva G., Newman, Laura E., Zhang, Xiao-Ou, Wu, Lizhen, Yan, Qin, Bosenberg, Marcus, Liu, Yanfeng, Sulkowski, Parker L., Tripple, Victoria, Kaech, Susan M., Glazer, Peter M., Shadel, Gerald S.
Publicado 2019

CRISPR/Cas9-mediated genome editing induces exon skipping by alternative splicing or exon deletion

por Mou, Haiwei, Smith, Jordan L., Peng, Lingtao, Yin, Hao, Moore, Jill, Zhang, Xiao-Ou, Song, Chun-Qing, Sheel, Ankur, Wu, Qiongqiong, Ozata, Deniz M., Li, Yingxiang, Anderson, Daniel G., Emerson, Charles P., Sontheimer, Erik J., Moore, Melissa J., Weng, Zhiping, Xue, Wen
Publicado 2017

Chemical modifications of adenine base editor mRNA and guide RNA expand its application scope

por Jiang, Tingting, Henderson, Jordana M., Coote, Kevin, Cheng, Yi, Valley, Hillary C., Zhang, Xiao-Ou, Wang, Qin, Rhym, Luke H., Cao, Yueying, Newby, Gregory A., Bihler, Hermann, Mense, Martin, Weng, Zhiping, Anderson, Daniel G., McCaffrey, Anton P., Liu, David R., Xue, Wen
Publicado 2020

5′-Modifications improve potency and efficacy of DNA donors for precision genome editing

por Ghanta, Krishna S, Chen, Zexiang, Mir, Aamir, Dokshin, Gregoriy A, Krishnamurthy, Pranathi M, Yoon, Yeonsoo, Gallant, Judith, Xu, Ping, Zhang, Xiao-Ou, Ozturk, Ahmet Rasit, Shin, Masahiro, Idrizi, Feston, Liu, Pengpeng, Gneid, Hassan, Edraki, Alireza, Lawson, Nathan D, Rivera-Pérez, Jaime A, Sontheimer, Erik J, Watts, Jonathan K, Mello, Craig C
Publicado 2021

Expanded encyclopaedias of DNA elements in the human and mouse genomes

por Moore, Jill E., Purcaro, Michael J., Pratt, Henry E., Epstein, Charles B., Shoresh, Noam, Adrian, Jessika, Kawli, Trupti, Davis, Carrie A., Dobin, Alexander, Kaul, Rajinder, Halow, Jessica, Van Nostrand, Eric L., Freese, Peter, Gorkin, David U., Shen, Yin, He, Yupeng, Mackiewicz, Mark, Pauli-Behn, Florencia, Williams, Brian A., Mortazavi, Ali, Keller, Cheryl A., Zhang, Xiao-Ou, Elhajjajy, Shaimae I., Huey, Jack, Dickel, Diane E., Snetkova, Valentina, Wei, Xintao, Wang, Xiaofeng, Rivera-Mulia, Juan Carlos, Rozowsky, Joel, Zhang, Jing, Chhetri, Surya B., Zhang, Jialing, Victorsen, Alec, White, Kevin P., Visel, Axel, Yeo, Gene W., Burge, Christopher B., Lécuyer, Eric, Gilbert, David M., Dekker, Job, Rinn, John, Mendenhall, Eric M., Ecker, Joseph R., Kellis, Manolis, Klein, Robert J., Noble, William S., Kundaje, Anshul, Guigó, Roderic, Farnham, Peggy J., Cherry, J. Michael, Myers, Richard M., Ren, Bing, Graveley, Brenton R., Gerstein, Mark B., Pennacchio, Len A., Snyder, Michael P., Bernstein, Bradley E., Wold, Barbara, Hardison, Ross C., Gingeras, Thomas R., Stamatoyannopoulos, John A., Weng, Zhiping
Publicado 2020