Keeping up with the genomes: efficient learning of our increasing knowledge of the tree of life

por Zhao, Zhengqiao, Cristian, Alexandru, Rosen, Gail
Publicado 2020

Interpretable and Predictive Deep Neural Network Modeling of the SARS-CoV-2 Spike Protein Sequence to Predict COVID-19 Disease Severity

por Sokhansanj, Bahrad A., Zhao, Zhengqiao, Rosen, Gail L.
Publicado 2022

16S rRNA sequence embeddings: Meaningful numeric feature representations of nucleotide sequences that are convenient for downstream analyses

por Woloszynek, Stephen, Zhao, Zhengqiao, Chen, Jian, Rosen, Gail L.
Publicado 2019

Amino Acid k-mer Feature Extraction for Quantitative Antimicrobial Resistance (AMR) Prediction by Machine Learning and Model Interpretation for Biological Insights

por ValizadehAslani, Taha, Zhao, Zhengqiao, Sokhansanj, Bahrad A., Rosen, Gail L.
Publicado 2020

Genetic grouping of SARS-CoV-2 coronavirus sequences using informative subtype markers for pandemic spread visualization

por Zhao, Zhengqiao, Sokhansanj, Bahrad A., Malhotra, Charvi, Zheng, Kitty, Rosen, Gail L.
Publicado 2020

Learning, visualizing and exploring 16S rRNA structure using an attention-based deep neural network

por Zhao, Zhengqiao, Woloszynek, Stephen, Agbavor, Felix, Mell, Joshua Chang, Sokhansanj, Bahrad A., Rosen, Gail L.
Publicado 2021

Exploring thematic structure and predicted functionality of 16S rRNA amplicon data

por Woloszynek, Stephen, Mell, Joshua Chang, Zhao, Zhengqiao, Simpson, Gideon, O’Connor, Michael P., Rosen, Gail L.
Publicado 2019

Emerging Priorities for Microbiome Research

por Cullen, Chad M., Aneja, Kawalpreet K., Beyhan, Sinem, Cho, Clara E., Woloszynek, Stephen, Convertino, Matteo, McCoy, Sophie J., Zhang, Yanyan, Anderson, Matthew Z., Alvarez-Ponce, David, Smirnova, Ekaterina, Karstens, Lisa, Dorrestein, Pieter C., Li, Hongzhe, Sen Gupta, Ananya, Cheung, Kevin, Powers, Jennifer Gloeckner, Zhao, Zhengqiao, Rosen, Gail L.
Publicado 2020

Critical Assessment of Metagenome Interpretation: the second round of challenges

por Meyer, Fernando, Fritz, Adrian, Deng, Zhi-Luo, Koslicki, David, Lesker, Till Robin, Gurevich, Alexey, Robertson, Gary, Alser, Mohammed, Antipov, Dmitry, Beghini, Francesco, Bertrand, Denis, Brito, Jaqueline J., Brown, C. Titus, Buchmann, Jan, Buluç, Aydin, Chen, Bo, Chikhi, Rayan, Clausen, Philip T. L. C., Cristian, Alexandru, Dabrowski, Piotr Wojciech, Darling, Aaron E., Egan, Rob, Eskin, Eleazar, Georganas, Evangelos, Goltsman, Eugene, Gray, Melissa A., Hansen, Lars Hestbjerg, Hofmeyr, Steven, Huang, Pingqin, Irber, Luiz, Jia, Huijue, Jørgensen, Tue Sparholt, Kieser, Silas D., Klemetsen, Terje, Kola, Axel, Kolmogorov, Mikhail, Korobeynikov, Anton, Kwan, Jason, LaPierre, Nathan, Lemaitre, Claire, Li, Chenhao, Limasset, Antoine, Malcher-Miranda, Fabio, Mangul, Serghei, Marcelino, Vanessa R., Marchet, Camille, Marijon, Pierre, Meleshko, Dmitry, Mende, Daniel R., Milanese, Alessio, Nagarajan, Niranjan, Nissen, Jakob, Nurk, Sergey, Oliker, Leonid, Paoli, Lucas, Peterlongo, Pierre, Piro, Vitor C., Porter, Jacob S., Rasmussen, Simon, Rees, Evan R., Reinert, Knut, Renard, Bernhard, Robertsen, Espen Mikal, Rosen, Gail L., Ruscheweyh, Hans-Joachim, Sarwal, Varuni, Segata, Nicola, Seiler, Enrico, Shi, Lizhen, Sun, Fengzhu, Sunagawa, Shinichi, Sørensen, Søren Johannes, Thomas, Ashleigh, Tong, Chengxuan, Trajkovski, Mirko, Tremblay, Julien, Uritskiy, Gherman, Vicedomini, Riccardo, Wang, Zhengyang, Wang, Ziye, Wang, Zhong, Warren, Andrew, Willassen, Nils Peder, Yelick, Katherine, You, Ronghui, Zeller, Georg, Zhao, Zhengqiao, Zhu, Shanfeng, Zhu, Jie, Garrido-Oter, Ruben, Gastmeier, Petra, Hacquard, Stephane, Häußler, Susanne, Khaledi, Ariane, Maechler, Friederike, Mesny, Fantin, Radutoiu, Simona, Schulze-Lefert, Paul, Smit, Nathiana, Strowig, Till, Bremges, Andreas, Sczyrba, Alexander, McHardy, Alice Carolyn
Publicado 2022