ebGSEA: an improved Gene Set Enrichment Analysis method for Epigenome-Wide-Association Studies

por Dong, Danyue, Tian, Yuan, Zheng, Shijie C, Teschendorff, Andrew E
Publicado 2019

A comparison of reference-based algorithms for correcting cell-type heterogeneity in Epigenome-Wide Association Studies

por Teschendorff, Andrew E., Breeze, Charles E., Zheng, Shijie C., Beck, Stephan
Publicado 2017

Identification of differentially methylated cell-types in Epigenome-Wide Association Studies

por Zheng, Shijie C, Breeze, Charles E., Beck, Stephan, Teschendorff, Andrew E.
Publicado 2018

Cell and tissue type independent age-associated DNA methylation changes are not rare but common

por Zhu, Tianyu, Zheng, Shijie C, Paul, Dirk S., Horvath, Steve, Teschendorff, Andrew E.
Publicado 2018

The multi-omic landscape of transcription factor inactivation in cancer

por Teschendorff, Andrew E., Zheng, Shijie C., Feber, Andy, Yang, Zhen, Beck, Stephan, Widschwendter, Martin
Publicado 2016

Pumping the brakes on RNA velocity by understanding and interpreting RNA velocity estimates

por Zheng, Shijie C., Stein-O’Brien, Genevieve, Boukas, Leandros, Goff, Loyal A., Hansen, Kasper D.
Publicado 2023

EpiDISH web server: Epigenetic Dissection of Intra-Sample-Heterogeneity with online GUI

por Zheng, Shijie C, Breeze, Charles E, Beck, Stephan, Dong, Danyue, Zhu, Tianyu, Ma, Liangxiao, Ye, Wei, Zhang, Guoqing, Teschendorff, Andrew E
Publicado 2020

A cell-type deconvolution meta-analysis of whole blood EWAS reveals lineage-specific smoking-associated DNA methylation changes

por You, Chenglong, Wu, Sijie, Zheng, Shijie C., Zhu, Tianyu, Jing, Han, Flagg, Ken, Wang, Guangyu, Jin, Li, Wang, Sijia, Teschendorff, Andrew E.
Publicado 2020

Correlation of an epigenetic mitotic clock with cancer risk

por Yang, Zhen, Wong, Andrew, Kuh, Diana, Paul, Dirk S., Rakyan, Vardhman K., Leslie, R. David, Zheng, Shijie C., Widschwendter, Martin, Beck, Stephan, Teschendorff, Andrew E.
Publicado 2016

Universal prediction of cell-cycle position using transfer learning

por Zheng, Shijie C., Stein-O’Brien, Genevieve, Augustin, Jonathan J., Slosberg, Jared, Carosso, Giovanni A., Winer, Briana, Shin, Gloria, Bjornsson, Hans T., Goff, Loyal A., Hansen, Kasper D.
Publicado 2022

recount3: summaries and queries for large-scale RNA-seq expression and splicing

por Wilks, Christopher, Zheng, Shijie C., Chen, Feng Yong, Charles, Rone, Solomon, Brad, Ling, Jonathan P., Imada, Eddie Luidy, Zhang, David, Joseph, Lance, Leek, Jeffrey T., Jaffe, Andrew E., Nellore, Abhinav, Collado-Torres, Leonardo, Hansen, Kasper D., Langmead, Ben
Publicado 2021

A meta-analysis of immune-cell fractions at high resolution reveals novel associations with common phenotypes and health outcomes

por Luo, Qi, Dwaraka, Varun B., Chen, Qingwen, Tong, Huige, Zhu, Tianyu, Seale, Kirsten, Raffaele, Joseph M., Zheng, Shijie C., Mendez, Tavis L., Chen, Yulu, Carreras, Natalia, Begum, Sofina, Mendez, Kevin, Voisin, Sarah, Eynon, Nir, Lasky-Su, Jessica A., Smith, Ryan, Teschendorff, Andrew E.
Publicado 2023

Limb development genes underlie variation in human fingerprint patterns

por Li, Jinxi, Glover, James D., Zhang, Haiguo, Peng, Meifang, Tan, Jingze, Mallick, Chandana Basu, Hou, Dan, Yang, Yajun, Wu, Sijie, Liu, Yu, Peng, Qianqian, Zheng, Shijie C., Crosse, Edie I., Medvinsky, Alexander, Anderson, Richard A., Brown, Helen, Yuan, Ziyu, Zhou, Shen, Xu, Yanqing, Kemp, John P., Ho, Yvonne Y.W., Loesch, Danuta Z., Wang, Lizhong, Li, Yingxiang, Tang, Senwei, Wu, Xiaoli, Walters, Robin G., Lin, Kuang, Meng, Ruogu, Lv, Jun, Chernus, Jonathan M., Neiswanger, Katherine, Feingold, Eleanor, Evans, David M., Medland, Sarah E., Martin, Nicholas G., Weinberg, Seth M., Marazita, Mary L., Chen, Gang, Chen, Zhengming, Zhou, Yong, Cheeseman, Michael, Wang, Lan, Jin, Li, Headon, Denis J., Wang, Sijia
Publicado 2022