Identifying species-specific k-mers for fast and accurate metagenotyping with Maast and GT-Pro

por Shi, Zhou Jason, Nayfach, Stephen, Pollard, Katherine S.
Publicado 2023

Maast: genotyping thousands of microbial strains efficiently

por Shi, Zhou Jason, Nayfach, Stephen, Pollard, Katherine S.
Publicado 2023

New insights from uncultivated genomes of the global human gut microbiome

por Nayfach, Stephen, Shi, Zhou Jason, Seshadri, Rekha, Pollard, Katherine S., Kyrpides, Nikos C.
Publicado 2019

Scalable Microbial Strain Inference in Metagenomic Data Using StrainFacts

por Smith, Byron J., Li, Xiangpeng, Shi, Zhou Jason, Abate, Adam, Pollard, Katherine S.
Publicado 2022

Green Tea Polyphenol (−)-Epigallocatechin-3-Gallate Restores Nrf2 Activity and Ameliorates Crescentic Glomerulonephritis

por Ye, Ting, Zhen, Junhui, Du, Yong, Zhou, Jason K., Peng, Ai, Vaziri, Nosratola D., Mohan, Chandra, Xu, Yan, Zhou, Xin J.
Publicado 2015

Oral microbiota of periodontal health and disease and their changes after nonsurgical periodontal therapy

por Chen, Casey, Hemme, Chris, Beleno, Joan, Shi, Zhou Jason, Ning, Daliang, Qin, Yujia, Tu, Qichao, Jorgensen, Michael, He, Zhili, Wu, Liyou, Zhou, Jizhong
Publicado 2018

Disentangling direct from indirect relationships in association networks

por Xiao, Naijia, Zhou, Aifen, Kempher, Megan L., Zhou, Benjamin Y., Shi, Zhou Jason, Yuan, Mengting, Guo, Xue, Wu, Linwei, Ning, Daliang, Van Nostrand, Joy, Firestone, Mary K., Zhou, Jizhong
Publicado 2022

A unified catalog of 204,938 reference genomes from the human gut microbiome

por Almeida, Alexandre, Nayfach, Stephen, Boland, Miguel, Strozzi, Francesco, Beracochea, Martin, Shi, Zhou Jason, Pollard, Katherine S., Sakharova, Ekaterina, Parks, Donovan H., Hugenholtz, Philip, Segata, Nicola, Kyrpides, Nikos C., Finn, Robert D.
Publicado 2020

Deciphering the genetic architecture and ethnographic distribution of IRD in three ethnic populations by whole genome sequence analysis

por Biswas, Pooja, Villanueva, Adda L., Soto-Hermida, Angel, Duncan, Jacque L., Matsui, Hiroko, Borooah, Shyamanga, Kurmanov, Berzhan, Richard, Gabriele, Khan, Shahid Y., Branham, Kari, Huang, Bonnie, Suk, John, Bakall, Benjamin, Goldberg, Jeffrey L., Gabriel, Luis, Khan, Naheed W., Raghavendra, Pongali B., Zhou, Jason, Devalaraja, Sindhu, Huynh, Andrew, Alapati, Akhila, Zawaydeh, Qais, Weleber, Richard G., Heckenlively, John R., Hejtmancik, J. Fielding, Riazuddin, Sheikh, Sieving, Paul A., Riazuddin, S. Amer, Frazer, Kelly A., Ayyagari, Radha
Publicado 2021