A Bayesian Network Driven Approach to Model the Transcriptional Response to Nitric Oxide in Saccharomyces cerevisiae

por Zhu, Jingchun, Jambhekar, Ashwini, Sarver, Aaron, DeRisi, Joseph
Publicado 2006

Exploring TCGA Pan-Cancer Data at the UCSC Cancer Genomics Browser

por Cline, Melissa S., Craft, Brian, Swatloski, Teresa, Goldman, Mary, Ma, Singer, Haussler, David, Zhu, Jingchun
Publicado 2013

Comparative Genomics Search for Losses of Long-Established Genes on the Human Lineage

por Zhu, Jingchun, Sanborn, J. Zachary, Diekhans, Mark, Lowe, Craig B, Pringle, Tom H, Haussler, David
Publicado 2007

Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray

por Bozdech, Zbynek, Zhu, Jingchun, Joachimiak, Marcin P, Cohen, Fred E, Pulliam, Brian, DeRisi, Joseph L
Publicado 2003

The Transcriptome of the Intraerythrocytic Developmental Cycle of Plasmodium falciparum

por Bozdech, Zbynek, Llinás, Manuel, Pulliam, Brian Lee, Wong, Edith D, Zhu, Jingchun, DeRisi, Joseph L
Publicado 2003

The UCSC Cancer Genomics Browser: update 2015

por Goldman, Mary, Craft, Brian, Swatloski, Teresa, Cline, Melissa, Morozova, Olena, Diekhans, Mark, Haussler, David, Zhu, Jingchun
Publicado 2014

RADIA: RNA and DNA Integrated Analysis for Somatic Mutation Detection

por Radenbaugh, Amie J., Ma, Singer, Ewing, Adam, Stuart, Joshua M., Collisson, Eric A., Zhu, Jingchun, Haussler, David
Publicado 2014

Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM

por Vaske, Charles J., Benz, Stephen C., Sanborn, J. Zachary, Earl, Dent, Szeto, Christopher, Zhu, Jingchun, Haussler, David, Stuart, Joshua M.
Publicado 2010

The UCSC Cancer Genomics Browser: update 2013

por Goldman, Mary, Craft, Brian, Swatloski, Teresa, Ellrott, Kyle, Cline, Melissa, Diekhans, Mark, Ma, Singer, Wilks, Chris, Stuart, Josh, Haussler, David, Zhu, Jingchun
Publicado 2013

A DNA hypermethylation module for the stem/progenitor cell signature of cancer

por Easwaran, Hariharan, Johnstone, Sarah E., Van Neste, Leander, Ohm, Joyce, Mosbruger, Tim, Wang, Qiuju, Aryee, Martin J., Joyce, Patrick, Ahuja, Nita, Weisenberger, Dan, Collisson, Eric, Zhu, Jingchun, Yegnasubramanian, Srinivasan, Matsui, William, Baylin, Stephen B.
Publicado 2012

The UCSC cancer genomics browser: update 2011

por Sanborn, J. Zachary, Benz, Stephen C., Craft, Brian, Szeto, Christopher, Kober, Kord M., Meyer, Laurence, Vaske, Charles J., Goldman, Mary, Smith, Kayla E., Kuhn, Robert M., Karolchik, Donna, Kent, W. James, Stuart, Joshua M., Haussler, David, Zhu, Jingchun
Publicado 2011

A user guide for the online exploration and visualization of PCAWG data

por Goldman, Mary J., Zhang, Junjun, Fonseca, Nuno A., Cortés-Ciriano, Isidro, Xiang, Qian, Craft, Brian, Piñeiro-Yáñez, Elena, O’Connor, Brian D., Bazant, Wojciech, Barrera, Elisabet, Muñoz-Pomer, Alfonso, Petryszak, Robert, Füllgrabe, Anja, Al-Shahrour, Fatima, Keays, Maria, Haussler, David, Weinstein, John N., Huber, Wolfgang, Valencia, Alfonso, Park, Peter J., Papatheodorou, Irene, Zhu, Jingchun, Ferretti, Vincent, Vazquez, Miguel
Publicado 2020

Comparative RNA-Sequencing Analysis Benefits a Pediatric Patient With Relapsed Cancer

por Newton, Yulia, Rassekh, S. Rod, Deyell, Rebecca J., Shen, Yaoqing, Jones, Martin R., Dunham, Chris, Yip, Stephen, Leelakumari, Sreeja, Zhu, Jingchun, McColl, Duncan, Swatloski, Teresa, Salama, Sofie R., Ng, Tony, Hendson, Glenda, Lee, Anna F., Ma, Yussanne, Moore, Richard, Mungall, Andrew J., Haussler, David, Stuart, Joshua M., Jantzen, Colleen, Laskin, Janessa, Jones, Steven J.M., Marra, Marco A., Morozova, Olena
Publicado 2018

Safety, Feasibility, and Merits of Longitudinal Molecular Testing of Multiple Metastatic Sites to Inform mTNBC Patient Treatment in the Intensive Trial of Omics in Cancer

por Burton, Kimberly A., Mahen, Elisabeth, Konnick, Eric Quentin, Blau, Sibel, Dorschner, Michael O., Ramirez, Arturo B., Schmechel, Stephen C., Song, Chaozhong, Parulkar, Rahul, Parker, Stephanie, Senecal, Francis Mark, Pritchard, Colin C., Mecham, Brigham H., Szeto, Christopher, Spilman, Patricia, Zhu, Jingchun, Gadi, Vijayakrishna K., Ronen, Roy, Stilwell, Jackie, Kaldjian, Eric, Dutkowski, Janusz, Benz, Stephen Charles, Rabizadeh, Shahrooz, Soon-Shiong, Patrick, Blau, C. Anthony
Publicado 2022

Comparative Tumor RNA Sequencing Analysis for Difficult-to-Treat Pediatric and Young Adult Patients With Cancer

por Vaske, Olena M., Bjork, Isabel, Salama, Sofie R., Beale, Holly, Tayi Shah, Avanthi, Sanders, Lauren, Pfeil, Jacob, Lam, Du L., Learned, Katrina, Durbin, Ann, Kephart, Ellen T., Currie, Rob, Newton, Yulia, Swatloski, Teresa, McColl, Duncan, Vivian, John, Zhu, Jingchun, Lee, Alex G., Leung, Stanley G., Spillinger, Aviv, Liu, Heng-Yi, Liang, Winnie S., Byron, Sara A., Berens, Michael E., Resnick, Adam C., Lacayo, Norman, Spunt, Sheri L., Rangaswami, Arun, Huynh, Van, Torno, Lilibeth, Plant, Ashley, Kirov, Ivan, Zabokrtsky, Keri B., Rassekh, S. Rod, Deyell, Rebecca J., Laskin, Janessa, Marra, Marco A., Sender, Leonard S., Mueller, Sabine, Sweet-Cordero, E. Alejandro, Goldstein, Theodore C., Haussler, David
Publicado 2019