Cost-effective DNA methylation profiling by FML-seq

por Foley, Joseph W, Zhu, Shirley X, West, Robert B
Publicado 2023

Cost-effective DNA methylation profiling by FML-seq

por Foley, Joseph W., Zhu, Shirley X., West, Robert B.
Publicado 2023

Next generation sequencing-based expression profiling identifies signatures from benign stromal proliferations that define stromal components of breast cancer

por Guo, Xiangqian, Zhu, Shirley X, Brunner, Alayne L, van de Rijn, Matt, West, Robert B
Publicado 2013

Gene expression profiling of single cells from archival tissue with laser-capture microdissection and Smart-3SEQ

por Foley, Joseph W., Zhu, Chunfang, Jolivet, Philippe, Zhu, Shirley X., Lu, Peipei, Meaney, Michael J., West, Robert B.
Publicado 2019

Cell-lineage heterogeneity and driver mutation recurrence in pre-invasive breast neoplasia

por Weng, Ziming, Spies, Noah, Zhu, Shirley X, Newburger, Daniel E, Kashef-Haghighi, Dorna, Batzoglou, Serafim, Sidow, Arend, West, Robert B
Publicado 2015

A shared transcriptional program in early breast neoplasias despite genetic and clinical distinctions

por Brunner, Alayne L, Li, Jun, Guo, Xiangqian, Sweeney, Robert T, Varma, Sushama, Zhu, Shirley X, Li, Rui, Tibshirani, Robert, West, Robert B
Publicado 2014

MicroRNA Profiling of BRCA1/2 Mutation-Carrying and Non-Mutation-Carrying High-Grade Serous Carcinomas of Ovary

por Lee, Cheng-Han, Subramanian, Subbaya, Beck, Andrew H., Espinosa, Inigo, Senz, Janine, Zhu, Shirley X., Huntsman, David, van de Rijn, Matt, Gilks, C. Blake
Publicado 2009

Genome evolution during progression to breast cancer

por Newburger, Daniel E., Kashef-Haghighi, Dorna, Weng, Ziming, Salari, Raheleh, Sweeney, Robert T., Brunner, Alayne L., Zhu, Shirley X., Guo, Xiangqian, Varma, Sushama, Troxell, Megan L., West, Robert B., Batzoglou, Serafim, Sidow, Arend
Publicado 2013

The microdissected gene expression landscape of nasopharyngeal cancer reveals vulnerabilities in FGF and noncanonical NF-κB signaling

por Tay, Joshua K., Zhu, Chunfang, Shin, June Ho, Zhu, Shirley X., Varma, Sushama, Foley, Joseph W., Vennam, Sujay, Yip, Yim Ling, Goh, Chuan Keng, Wang, De Yun, Loh, Kwok Seng, Tsao, Sai Wah, Le, Quynh-Thu, Sunwoo, John B., West, Robert B.
Publicado 2022

Transcriptional profiling of long non-coding RNAs and novel transcribed regions across a diverse panel of archived human cancers

por Brunner, Alayne L, Beck, Andrew H, Edris, Badreddin, Sweeney, Robert T, Zhu, Shirley X, Li, Rui, Montgomery, Kelli, Varma, Sushama, Gilks, Thea, Guo, Xiangqian, Foley, Joseph W, Witten, Daniela M, Giacomini, Craig P, Flynn, Ryan A, Pollack, Jonathan R, Tibshirani, Robert, Chang, Howard Y, van de Rijn, Matt, West, Robert B
Publicado 2012

Molecular classification and biomarkers of clinical outcome in breast ductal carcinoma in situ: Analysis of TBCRC 038 and RAHBT cohorts

por Strand, Siri H., Rivero-Gutiérrez, Belén, Houlahan, Kathleen E., Seoane, Jose A., King, Lorraine M., Risom, Tyler, Simpson, Lunden A., Vennam, Sujay, Khan, Aziz, Cisneros, Luis, Hardman, Timothy, Harmon, Bryan, Couch, Fergus, Gallagher, Kristalyn, Kilgore, Mark, We, Shi, DeMichele, Angela, King, Tari, McAuliffe, Priscilla F., Nangia, Julie, Lee, Joanna, Tseng, Jennifer, Storniolo, Anna Maria, Thompson, Alastair M., Gupta, Gaorav P., Burns, Robyn, Veis, Deborah J., DeSchryver, Katherine, Zhu, Chunfang, Matusiak, Magdalena, Wang, Jason, Zhu, Shirley X., Tappenden, Jen, Ding, Daisy Yi, Zhang, Dadong, Luo, Jingqin, Jiang, Shu, Varma, Sushama, Anderson, Lauren, Straub, Cody, Srivastava, Sucheta, Curtis, Christina, Tibshirani, Rob, Angelo, Robert Michael, Hall, Allison, Owzar, Kouros, Polyak, Kornelia, Maley, Carlo, Marks, Jeffrey R., Colditz, Graham A., Shelley Hwang, E., West, Robert B.
Publicado 2023