Local sequence assembly reveals a high-resolution profile of somatic structural variations in 97 cancer genomes

por Zhuang, Jiali, Weng, Zhiping
Publicado 2015

TEMP: a computational method for analyzing transposable element polymorphism in populations

por Zhuang, Jiali, Wang, Jie, Theurkauf, William, Weng, Zhiping
Publicado 2014

Survey of extracellular communication of systemic and organ-specific inflammatory responses through cell free messenger RNA profiling in mice

por Zhuang, Jiali, Ibarra, Arkaitz, Acosta, Alexander, Karns, Amy P., Aballi, Jonathan, Nerenberg, Michael, Sninsky, John J., Quake, Stephen R., Toden, Shusuke
Publicado 2022

Noninvasive characterization of Alzheimer’s disease by circulating, cell-free messenger RNA next-generation sequencing

por Toden, Shusuke, Zhuang, Jiali, Acosta, Alexander D., Karns, Amy P., Salathia, Neeraj S., Brewer, James B., Wilcock, Donna M., Aballi, Jonathan, Nerenberg, Mike, Quake, Stephen R., Ibarra, Arkaitz
Publicado 2020

Circulating cell-free messenger RNA secretome characterization of primary sclerosing cholangitis

por Chalasani, Naga, Vuppalanchi, Raj, Lammert, Craig, Gawrieh, Samer, Braun, Jerome V., Zhuang, Jiali, Ibarra, Arkaitz, Ross, David A., Nerenberg, Michael, Quake, Stephen R., Sninsky, John J., Toden, Shusuke
Publicado 2023

Forward genetic screen of human transposase genomic rearrangements

por Henssen, Anton G., Jiang, Eileen, Zhuang, Jiali, Pinello, Luca, Socci, Nicholas D., Koche, Richard, Gonen, Mithat, Villasante, Camila M., Armstrong, Scott A., Bauer, Daniel E., Weng, Zhiping, Kentsis, Alex
Publicado 2016

Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium

por Wang, Jie, Zhuang, Jiali, Iyer, Sowmya, Lin, Xin-Ying, Greven, Melissa C., Kim, Bong-Hyun, Moore, Jill, Pierce, Brian G., Dong, Xianjun, Virgil, Daniel, Birney, Ewan, Hung, Jui-Hung, Weng, Zhiping
Publicado 2013

Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors

por Wang, Jie, Zhuang, Jiali, Iyer, Sowmya, Lin, XinYing, Whitfield, Troy W., Greven, Melissa C., Pierce, Brian G., Dong, Xianjun, Kundaje, Anshul, Cheng, Yong, Rando, Oliver J., Birney, Ewan, Myers, Richard M., Noble, William S., Snyder, Michael, Weng, Zhiping
Publicado 2012

Non-invasive characterization of human bone marrow stimulation and reconstitution by cell-free messenger RNA sequencing

por Ibarra, Arkaitz, Zhuang, Jiali, Zhao, Yue, Salathia, Neeraj S., Huang, Vera, Acosta, Alexander D., Aballi, Jonathan, Toden, Shusuke, Karns, Amy P., Purnajo, Intan, Parks, Julianna R., Guo, Lucy, Mason, James, Sigal, Darren, Nova, Tina S., Quake, Stephen R., Nerenberg, Michael
Publicado 2020

PGBD5 promotes site-specific oncogenic mutations in human tumors

por Henssen, Anton G., Koche, Richard, Zhuang, Jiali, Jiang, Eileen, Reed, Casie, Eisenberg, Amy, Still, Eric, MacArthur, Ian C., Rodríguez-Fos, Elias, Gonzalez, Santiago, Puiggròs, Montserrat, Blackford, Andrew N., Mason, Christopher E., de Stanchina, Elisa, Gönen, Mithat, Emde, Anne-Katrin, Shah, Minita, Arora, Kanika, Reeves, Catherine, Socci, Nicholas D., Perlman, Elizabeth, Antonescu, Cristina R., Roberts, Charles W. M., Steen, Hanno, Mullen, Elizabeth, Jackson, Stephen P., Torrents, David, Weng, Zhiping, Armstrong, Scott A., Kentsis, Alex
Publicado 2017