mitch: multi-contrast pathway enrichment for multi-omics and single-cell profiling data

por Kaspi, Antony, Ziemann, Mark
Publicado 2020

The five pillars of computational reproducibility: bioinformatics and beyond

por Ziemann, Mark, Poulain, Pierre, Bora, Anusuiya
Publicado 2023

OrthoRBH: A streamlined pipeline for mining large gene family sequences in related species

por Ziemann, Mark, Kamboj, Atul, Bhave, Mrinal
Publicado 2013

Identification and Expression Analysis of the Barley (Hordeum vulgare L.) Aquaporin Gene Family

por Hove, Runyararo M., Ziemann, Mark, Bhave, Mrinal
Publicado 2015

Evaluation of microRNA alignment techniques

por Ziemann, Mark, Kaspi, Antony, El-Osta, Assam
Publicado 2016

Gene name errors are widespread in the scientific literature

por Ziemann, Mark, Eren, Yotam, El-Osta, Assam
Publicado 2016

Digital expression explorer 2: a repository of uniformly processed RNA sequencing data

por Ziemann, Mark, Kaspi, Antony, El-Osta, Assam
Publicado 2019

Motif analysis in DNAse hypersensitivity regions uncovers distal cis elements associated with gene expression

por Ziemann, Mark, Kaspi, Antony, Lazarus, Ross, El-Osta, Assam
Publicado 2013

Gene name errors: Lessons not learned

por Abeysooriya, Mandhri, Soria, Megan, Kasu, Mary Sravya, Ziemann, Mark
Publicado 2021

Transcriptomic Analysis of Dysregulated Genes of the nDNA-mtDNA Axis in a Mouse Model of Dilated Cardiomyopathy

por Ziemann, Mark, Wu, Wei, Deng, Xiu-Ling, Du, Xiao-Jun
Publicado 2022

Urgent need for consistent standards in functional enrichment analysis

por Wijesooriya, Kaumadi, Jadaan, Sameer A., Perera, Kaushalya L., Kaur, Tanuveer, Ziemann, Mark
Publicado 2022

Valproic acid attenuates cellular senescence in diabetic kidney disease through the inhibition of complement C5a receptors

por Coughlan, Melinda T., Ziemann, Mark, Laskowski, Adrienne, Woodruff, Trent M., Tan, Sih Min
Publicado 2022

Set7 mediated interactions regulate transcriptional networks in embryonic stem cells

por Tuano, Natasha K., Okabe, Jun, Ziemann, Mark, Cooper, Mark E., El-Osta, Assam
Publicado 2016

Phaeophyceaean (Brown Algal) Extracts Activate Plant Defense Systems in Arabidopsis thaliana Challenged With Phytophthora cinnamomi

por Islam, Md Tohidul, Gan, Han Ming, Ziemann, Mark, Hussain, Hashmath Inayath, Arioli, Tony, Cahill, David
Publicado 2020

Current Perspectives in Set7 Mediated Stem Cell Differentiation

por Karimnia, Nazanin, Rafehi, Haloom, Tuano, Natasha K., Ziemann, Mark, K.N., Harikrishnan, Okabe, Jun, El-Osta, Assam
Publicado 2016

Stimulating Mitochondrial Biogenesis with Deoxyribonucleosides Increases Functional Capacity in ECHS1-Deficient Cells

por Burgin, Harrison James, Crameri, Jordan James, Stojanovski, Diana, Sanchez, M. Isabel G. Lopez, Ziemann, Mark, McKenzie, Matthew
Publicado 2022

Age-Related Differential Structural and Transcriptomic Responses in the Hypertensive Heart

por Marques, Francine Z., Chu, Po-Yin, Ziemann, Mark, Kaspi, Antony, Kiriazis, Helen, Du, Xiao-Jun, El-Osta, Assam, Kaye, David M.
Publicado 2018

Transcription factors Tp73, Cebpd, Pax6, and Spi1 rather than DNA methylation regulate chronic transcriptomics changes after experimental traumatic brain injury

por Lipponen, Anssi, El-Osta, Assam, Kaspi, Antony, Ziemann, Mark, Khurana, Ishant, KN, Harikrishnan, Navarro-Ferrandis, Vicente, Puhakka, Noora, Paananen, Jussi, Pitkänen, Asla
Publicado 2018

Loss of mitochondrial fatty acid β‐oxidation protein short‐chain Enoyl‐CoA hydratase disrupts oxidative phosphorylation protein complex stability and function

por Burgin, Harrison, Sharpe, Alice J., Nie, Shuai, Ziemann, Mark, Crameri, Jordan J., Stojanovski, Diana, Pitt, James, Ohtake, Akira, Murayama, Kei, McKenzie, Matthew
Publicado 2022

Multicellular Transcriptional Analysis of Mammalian Heart Regeneration

por Quaife-Ryan, Gregory A., Sim, Choon Boon, Ziemann, Mark, Kaspi, Antony, Rafehi, Haloom, Ramialison, Mirana, El-Osta, Assam, Hudson, James E., Porrello, Enzo R.
Publicado 2017