Coverage recommendations for methylation analysis by whole genome bisulfite sequencing

por Ziller, Michael J., Hansen, Kasper D., Meissner, Alexander, Aryee, Martin J.
Publicado 2014

Targeted bisulfite sequencing of the dynamic DNA methylome

por Ziller, Michael J., Stamenova, Elena K., Gu, Hongcang, Gnirke, Andreas, Meissner, Alexander
Publicado 2016

Transcription factor binding dynamics during human ESC differentiation

por Tsankov, Alexander M., Gu, Hongcang, Akopian, Veronika, Ziller, Michael J., Donaghey, Julie, Amit, Ido, Gnirke, Andreas, Meissner, Alexander
Publicado 2015

Single-Cell RNA-Sequencing-Based CRISPRi Screening Resolves Molecular Drivers of Early Human Endoderm Development

por Genga, Ryan M.J., Kernfeld, Eric M., Parsi, Krishna M., Parsons, Teagan J., Ziller, Michael J., Maehr, René
Publicado 2019

Modeling metabolic networks in C. glutamicum: a comparison of rate laws in combination with various parameter optimization strategies

por Dräger, Andreas, Kronfeld, Marcel, Ziller, Michael J, Supper, Jochen, Planatscher, Hannes, Magnus, Jørgen B, Oldiges, Marco, Kohlbacher, Oliver, Zell, Andreas
Publicado 2009

The systems biology simulation core algorithm

por Keller, Roland, Dörr, Alexander, Tabira, Akito, Funahashi, Akira, Ziller, Michael J, Adams, Richard, Rodriguez, Nicolas, Novère, Nicolas Le, Hiroi, Noriko, Planatscher, Hannes, Zell, Andreas, Dräger, Andreas
Publicado 2013

Genomic Distribution and Inter-Sample Variation of Non-CpG Methylation across Human Cell Types

por Ziller, Michael J., Müller, Fabian, Liao, Jing, Zhang, Yingying, Gu, Hongcang, Bock, Christoph, Boyle, Patrick, Epstein, Charles B., Bernstein, Bradley E., Lengauer, Thomas, Gnirke, Andreas, Meissner, Alexander
Publicado 2011

Cell type and condition specific functional annotation of schizophrenia associated non-coding genetic variants

por Rummel, Christine K., Gagliardi, Miriam, Herholt, Alexander, Ahmad, Ruhel, Murek, Vanessa, Weigert, Liesa, Hausruckinger, Anna, Maidl, Susanne, Jimenez-Barron, Laura, Trastulla, Lucia, Eder, Mathias, Rossner, Moritz, Ziller, Michael J.
Publicado 2023

Analysing human neural stem cell ontogeny by consecutive isolation of Notch active neural progenitors

por Edri, Reuven, Yaffe, Yakey, Ziller, Michael J., Mutukula, Naresh, Volkman, Rotem, David, Eyal, Jacob-Hirsch, Jasmine, Malcov, Hagar, Levy, Carmit, Rechavi, Gideon, Gat-Viks, Irit, Meissner, Alexander, Elkabetz, Yechiel
Publicado 2015

Temporally divergent regulatory mechanisms govern neuronal diversification and maturation in the mouse and marmoset neocortex

por Yuan, Wen, Ma, Sai, Brown, Juliana R., Kim, Kwanho, Murek, Vanessa, Trastulla, Lucia, Meissner, Alexander, Lodato, Simona, Shetty, Ashwin S., Levin, Joshua Z., Buenrostro, Jason D., Ziller, Michael J., Arlotta, Paola
Publicado 2022

Charting a dynamic DNA methylation landscape of the human genome

por Ziller, Michael J., Gu, Hongcang, Müller, Fabian, Donaghey, Julie, Tsai, Linus T.-Y., Kohlbacher, Oliver, De Jager, Phil L., Rosen, Evan D., Bennett, David A., Bernstein, Bradley E., Gnirke, Andreas, Meissner, Alexander
Publicado 2013

Information recovery from low coverage whole-genome bisulfite sequencing

por Libertini, Emanuele, Heath, Simon C., Hamoudi, Rifat A., Gut, Marta, Ziller, Michael J., Czyz, Agata, Ruotti, Victor, Stunnenberg, Hendrik G., Frontini, Mattia, Ouwehand, Willem H., Meissner, Alexander, Gut, Ivo G., Beck, Stephan
Publicado 2016

Expression of Lineage Transcription Factors Identifies Differences in Transition States of Induced Human Oligodendrocyte Differentiation

por Raabe, Florian J., Stephan, Marius, Waldeck, Jan Benedikt, Huber, Verena, Demetriou, Damianos, Kannaiyan, Nirmal, Galinski, Sabrina, Glaser, Laura V., Wehr, Michael C., Ziller, Michael J., Schmitt, Andrea, Falkai, Peter, Rossner, Moritz J.
Publicado 2022

Global delay in nascent strand DNA methylation

por Charlton, Jocelyn, Downing, Timothy L., Smith, Zachary D., Gu, Hongcang, Clement, Kendell, Pop, Ramona, Akopian, Veronika, Klages, Sven, Santos, David P., Tsankov, Alexander M., Timmermann, Bernd, Ziller, Michael J., Kiskinis, Evangelos, Gnirke, Andreas, Meissner, Alexander
Publicado 2018

Epigenomics and chromatin dynamics

por Akopian, Veronika, Chan, Michelle M, Clement, Kendell, Galonska, Christina, Gifford, Casey A, Lehtola, Elizabeth, Liao, Jing, Samavarchi-Tehrani, Payman, Sindhu, Camille, Smith, Zachary D, Tsankov, Alexander M, Webster, Jamie, Zhang, Yingying, Ziller, Michael J, Meissner, Alexander
Publicado 2012

Genome-wide tracking of dCas9-methyltransferase footprints

por Galonska, Christina, Charlton, Jocelyn, Mattei, Alexandra L., Donaghey, Julie, Clement, Kendell, Gu, Hongcang, Mohammad, Arman W., Stamenova, Elena K., Cacchiarelli, Davide, Klages, Sven, Timmermann, Bernd, Cantz, Tobias, Schöler, Hans R., Gnirke, Andreas, Ziller, Michael J., Meissner, Alexander
Publicado 2018

Genetic determinants and epigenetic effects of pioneer factor occupancy

por Donaghey, Julie, Thakurela, Sudhir, Charlton, Jocelyn, Chen, Jennifer, Smith, Zachary D., Gu, Hongcang, Pop, Ramona, Clement, Kendell, Stamenova, Elena, Karnik, Rahul, Kelley, David R., Gifford, Casey A., Cacchiarelli, Davide, Rinn, John L., Gnirke, Andreas, Ziller, Michael J., Meissner, Alexander
Publicado 2018

A stably self-renewing adult blood-derived induced neural stem cell exhibiting patternability and epigenetic rejuvenation

por Sheng, Chao, Jungverdorben, Johannes, Wiethoff, Hendrik, Lin, Qiong, Flitsch, Lea J., Eckert, Daniela, Hebisch, Matthias, Fischer, Julia, Kesavan, Jaideep, Weykopf, Beatrice, Schneider, Linda, Holtkamp, Dominik, Beck, Heinz, Till, Andreas, Wüllner, Ullrich, Ziller, Michael J., Wagner, Wolfgang, Peitz, Michael, Brüstle, Oliver
Publicado 2018

Targeted disruption of DNMT1, DNMT3A and DNMT3B in human embryonic stem cells

por Liao, Jing, Karnik, Rahul, Gu, Hongcang, Ziller, Michael J., Clement, Kendell, Tsankov, Alexander M., Akopian, Veronika, Gifford, Casey A., Donaghey, Julie, Galonska, Christina, Pop, Ramona, Reyon, Deepak, Tsai, Shengdar Q., Mallard, William, Joung, J. Keith, Rinn, John L., Gnirke, Andreas, Meissner, Alexander
Publicado 2015

Distinct genetic liability profiles define clinically relevant patient strata across common diseases

por Trastulla, Lucia, Moser, Sylvain, Jiménez-Barrón, Laura T., Andlauer, Till F.M., von Scheidt, Moritz, Budde, Monika, Heilbronner, Urs, Papiol, Sergi, Teumer, Alexander, Homuth, Georg, Falkai, Peter, Völzke, Henry, Dörr, Marcus, Schulze, Thomas G., Gagneur, Julien, Iorio, Francesco, Müller-Myhsok, Bertram, Schunkert, Heribert, Ziller, Michael J.
Publicado 2023