The genome polishing tool POLCA makes fast and accurate corrections in genome assemblies

por Zimin, Aleksey V., Salzberg, Steven L.
Publicado 2020

The SAMBA tool uses long reads to improve the contiguity of genome assemblies

por Zimin, Aleksey V., Salzberg, Steven L.
Publicado 2022

QuorUM: An Error Corrector for Illumina Reads

por Marçais, Guillaume, Yorke, James A., Zimin, Aleksey
Publicado 2015

Chromosome-level genome and the identification of sex chromosomes in Uloborus diversus

por Miller, Jeremiah, Zimin, Aleksey V, Gordus, Andrew
Publicado 2023

JASPER: A fast genome polishing tool that improves accuracy of genome assemblies

por Guo, Alina, Salzberg, Steven L., Zimin, Aleksey V.
Publicado 2023

Metagenomic classification with KrakenUniq on low-memory computers

por Pockrandt, Christopher, Zimin, Aleksey V., Salzberg, Steven L.
Publicado 2022

Evolution of transcriptional networks in yeast: alternative teams of transcriptional factors for different species

por Muñoz, Adriana, Santos Muñoz, Daniella, Zimin, Aleksey, Yorke, James A.
Publicado 2016

Human contamination in bacterial genomes has created thousands of spurious proteins

por Breitwieser, Florian P., Pertea, Mihaela, Zimin, Aleksey V., Salzberg, Steven L.
Publicado 2019

The first gapless, reference-quality, fully annotated genome from a Southern Han Chinese individual

por Chao, Kuan-Hao, Zimin, Aleksey V, Pertea, Mihaela, Salzberg, Steven L
Publicado 2023

The first near-complete assembly of the hexaploid bread wheat genome, Triticum aestivum

por Zimin, Aleksey V, Puiu, Daniela, Hall, Richard, Kingan, Sarah, Clavijo, Bernardo J, Salzberg, Steven L
Publicado 2017

MUMmer4: A fast and versatile genome alignment system

por Marçais, Guillaume, Delcher, Arthur L., Phillippy, Adam M., Coston, Rachel, Salzberg, Steven L., Zimin, Aleksey
Publicado 2018

Transcriptome assembly from long-read RNA-seq alignments with StringTie2

por Kovaka, Sam, Zimin, Aleksey V., Pertea, Geo M., Razaghi, Roham, Salzberg, Steven L., Pertea, Mihaela
Publicado 2019

The genome of the American groundhog, Marmota monax

por Puiu, Daniela, Zimin, Aleksey, Shumate, Alaina, Ge, Yuchen, Qiu, Jiabin, Bhaskaran, Manoj, Salzberg, Steven L.
Publicado 2020

Mis-Assembled “Segmental Duplications” in Two Versions of the Bos taurus Genome

por Zimin, Aleksey V., Kelley, David R., Roberts, Michael, Marçais, Guillaume, Salzberg, Steven L., Yorke, James A.
Publicado 2012

Improving Phrap-Based Assembly of the Rat Using “Reliable” Overlaps

por Roberts, Michael, Zimin, Aleksey V., Hayes, Wayne, Hunt, Brian R., Ustun, Cevat, White, James R., Havlak, Paul, Yorke, James
Publicado 2008

Impacts of Sex Ratio Meiotic Drive on Genome Structure and Function in a Stalk-Eyed Fly

por Reinhardt, Josephine A, Baker, Richard H, Zimin, Aleksey V, Ladias, Chloe, Paczolt, Kimberly A, Werren, John H, Hayashi, Cheryl Y, Wilkinson, Gerald S
Publicado 2023

Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm

por Zimin, Aleksey V., Puiu, Daniela, Luo, Ming-Cheng, Zhu, Tingting, Koren, Sergey, Marçais, Guillaume, Yorke, James A., Dvořák, Jan, Salzberg, Steven L.
Publicado 2017

A pseudomolecule assembly of the Rocky Mountain elk genome

por Masonbrink, Rick E., Alt, David, Bayles, Darrell O., Boggiatto, Paola, Edwards, William, Tatum, Fred, Williams, Jeffrey, Wilson-Welder, Jennifer, Zimin, Aleksey, Severin, Andrew, Olsen, Steven
Publicado 2021

An improved assembly of the loblolly pine mega-genome using long-read single-molecule sequencing

por Zimin, Aleksey V., Stevens, Kristian A., Crepeau, Marc W., Puiu, Daniela, Wegrzyn, Jill L., Yorke, James A., Langley, Charles H., Neale, David B., Salzberg, Steven L.
Publicado 2017

Erratum to: An improved assembly of the loblolly pine mega-genome using long-read single-molecule sequencing

por Zimin, Aleksey V., Stevens, Kristian A., Crepeau, Marc W., Puiu, Daniela, Wegrzyn, Jill L., Yorke, James A., Langley, Charles H., Neale, David B., Salzberg, Steven L.
Publicado 2017