Lone Pair…π Contacts and Structure Signatures of r(UNCG) Tetraloops, Z-Turns, and Z-Steps: A WebFR3D Survey

por Zirbel, Craig L., Auffinger, Pascal
Publicado 2022

WebFR3D—a server for finding, aligning and analyzing recurrent RNA 3D motifs

por Petrov, Anton I., Zirbel, Craig L., Leontis, Neocles B.
Publicado 2011

Automated classification of RNA 3D motifs and the RNA 3D Motif Atlas

por Petrov, Anton I., Zirbel, Craig L., Leontis, Neocles B.
Publicado 2013

Frequency and isostericity of RNA base pairs

por Stombaugh, Jesse, Zirbel, Craig L., Westhof, Eric, Leontis, Neocles B.
Publicado 2009

RNA 3-dimensional structural motifs as a critical constraint of viroid RNA evolution

por Wang, Ying, Zirbel, Craig L., Leontis, Neocles B., Ding, Biao
Publicado 2018

Anionic G•U pairs in bacterial ribosomal rRNAs

por Westhof, Eric, Watson, Zoe L., Zirbel, Craig L., Cate, Jamie H.D.
Publicado 2023

R3D Align web server for global nucleotide to nucleotide alignments of RNA 3D structures

por Rahrig, Ryan R., Petrov, Anton I., Leontis, Neocles B., Zirbel, Craig L.
Publicado 2013

JAR3D Webserver: Scoring and aligning RNA loop sequences to known 3D motifs

por Roll, James, Zirbel, Craig L., Sweeney, Blake, Petrov, Anton I., Leontis, Neocles
Publicado 2016

Allelic RNA Motifs in Regulating Systemic Trafficking of Potato Spindle Tuber Viroid

por Takeda, Ryuta, Zirbel, Craig L., Leontis, Neocles B., Wang, Ying, Ding, Biao
Publicado 2018

Classification and energetics of the base-phosphate interactions in RNA

por Zirbel, Craig L., Šponer, Judit E., Šponer, Jiri, Stombaugh, Jesse, Leontis, Neocles B.
Publicado 2009

How to fold and protect mitochondrial ribosomal RNA with fewer guanines

por Hosseini, Maryam, Roy, Poorna, Sissler, Marie, Zirbel, Craig L, Westhof, Eric, Leontis, Neocles
Publicado 2018

A three-dimensional RNA motif mediates directional trafficking of Potato spindle tuber viroid from epidermal to palisade mesophyll cells in Nicotiana benthamiana

por Wu, Jian, Leontis, Neocles B., Zirbel, Craig L., Bisaro, David M., Ding, Biao
Publicado 2019

Correction: A three-dimensional RNA motif mediates directional trafficking of Potato spindle tuber viroid from epidermal to palisade mesophyll cells in Nicotiana benthamiana

por Wu, Jian, Leontis, Neocles B., Zirbel, Craig L., Bisaro, David M., Ding, Biao
Publicado 2022

Comprehensive survey and geometric classification of base triples in RNA structures

por Abu Almakarem, Amal S., Petrov, Anton I., Stombaugh, Jesse, Zirbel, Craig L., Leontis, Neocles B.
Publicado 2012

Identifying novel sequence variants of RNA 3D motifs

por Zirbel, Craig L., Roll, James, Sweeney, Blake A., Petrov, Anton I., Pirrung, Meg, Leontis, Neocles B.
Publicado 2015

R3D-2-MSA: the RNA 3D structure-to-multiple sequence alignment server

por Cannone, Jamie J., Sweeney, Blake A., Petrov, Anton I., Gutell, Robin R., Zirbel, Craig L., Leontis, Neocles
Publicado 2015

RNA 3D Modules in Genome-Wide Predictions of RNA 2D Structure

por Theis, Corinna, Zirbel, Craig L., zu Siederdissen, Christian Höner, Anthon, Christian, Hofacker, Ivo L., Nielsen, Henrik, Gorodkin, Jan
Publicado 2015

The Nucleic Acid Database: new features and capabilities

por Coimbatore Narayanan, Buvaneswari, Westbrook, John, Ghosh, Saheli, Petrov, Anton I., Sweeney, Blake, Zirbel, Craig L., Leontis, Neocles B., Berman, Helen M.
Publicado 2014

Functional analysis reveals G/U pairs critical for replication and trafficking of an infectious non-coding viroid RNA

por Wu, Jian, Zhou, Cuiji, Li, James, Li, Chun, Tao, Xiaorong, Leontis, Neocles B, Zirbel, Craig L, Bisaro, David M, Ding, Biao
Publicado 2020

Functional analysis reveals G/U pairs critical for replication and trafficking of an infectious non-coding viroid RNA

por Wu, Jian, Zhou, Cuiji, Li, James, Li, Chun, Tao, Xiaorong, Leontis, Neocles B, Zirbel, Craig L, Bisaro, David M, Ding, Biao
Publicado 2020