taxMaps: comprehensive and highly accurate taxonomic classification of short-read data in reasonable time

por Corvelo, André, Clarke, Wayne E., Robine, Nicolas, Zody, Michael C.
Publicado 2018

V-Phaser 2: variant inference for viral populations

por Yang, Xiao, Charlebois, Patrick, Macalalad, Alex, Henn, Matthew R, Zody, Michael C
Publicado 2013

Identifying novel constrained elements by exploiting biased substitution patterns

por Garber, Manuel, Guttman, Mitchell, Clamp, Michele, Zody, Michael C., Friedman, Nir, Xie, Xiaohui
Publicado 2009

Conpair: concordance and contamination estimator for matched tumor–normal pairs

por Bergmann, Ewa A., Chen, Bo-Juen, Arora, Kanika, Vacic, Vladimir, Zody, Michael C.
Publicado 2016

ATHLATES: accurate typing of human leukocyte antigen through exome sequencing

por Liu, Chang, Yang, Xiao, Duffy, Brian, Mohanakumar, Thalachallour, Mitra, Robi D., Zody, Michael C., Pfeifer, John D.
Publicado 2013

Closing gaps in the human genome using sequencing by synthesis

por Garber, Manuel, Zody, Michael C, Arachchi, Harindra M, Berlin, Aaron, Gnerre, Sante, Green, Lisa M, Lennon, Niall, Nusbaum, Chad
Publicado 2009

Correction: Closing gaps in the human genome using sequencing by synthesis

por Garber, Manuel, Zody, Michael C, Arachchi, Harindra C, Berlin, Aaron, Gnerre, Sante, Green, Lisa M, Lennon, Niall, Nusbaum, Chad
Publicado 2011

Whole-genome bisulfite sequencing with improved accuracy and cost

por Suzuki, Masako, Liao, Will, Wos, Frank, Johnston, Andrew D., DeGrazia, Justin, Ishii, Jennifer, Bloom, Toby, Zody, Michael C., Germer, Soren, Greally, John M.
Publicado 2018

Genome-wide somatic variant calling using localized colored de Bruijn graphs

por Narzisi, Giuseppe, Corvelo, André, Arora, Kanika, Bergmann, Ewa A., Shah, Minita, Musunuri, Rajeeva, Emde, Anne-Katrin, Robine, Nicolas, Vacic, Vladimir, Zody, Michael C.
Publicado 2018

De novo assembly of highly diverse viral populations

por Yang, Xiao, Charlebois, Patrick, Gnerre, Sante, Coole, Matthew G, Lennon, Niall J, Levin, Joshua Z, Qu, James, Ryan, Elizabeth M, Zody, Michael C, Henn, Matthew R
Publicado 2012

Novel origins of copy number variation in the dog genome

por Berglund, Jonas, Nevalainen, Elisa M, Molin, Anna-Maja, Perloski, Michele, André, Catherine, Zody, Michael C, Sharpe, Ted, Hitte, Christophe, Lindblad-Toh, Kerstin, Lohi, Hannes, Webster, Matthew T
Publicado 2012

Deep whole-genome sequencing of 3 cancer cell lines on 2 sequencing platforms

por Arora, Kanika, Shah, Minita, Johnson, Molly, Sanghvi, Rashesh, Shelton, Jennifer, Nagulapalli, Kshithija, Oschwald, Dayna M., Zody, Michael C., Germer, Soren, Jobanputra, Vaidehi, Carter, Jade, Robine, Nicolas
Publicado 2019

Exploiting Nucleotide Composition to Engineer Promoters

por Grabherr, Manfred G., Pontiller, Jens, Mauceli, Evan, Ernst, Wolfgang, Baumann, Martina, Biagi, Tara, Swofford, Ross, Russell, Pamela, Zody, Michael C., Di Palma, Federica, Lindblad-Toh, Kerstin, Grabherr, Reingard M.
Publicado 2011

Pangenome-based genome inference allows efficient and accurate genotyping across a wide spectrum of variant classes

por Ebler, Jana, Ebert, Peter, Clarke, Wayne E., Rausch, Tobias, Audano, Peter A., Houwaart, Torsten, Mao, Yafei, Korbel, Jan O., Eichler, Evan E., Zody, Michael C., Dilthey, Alexander T., Marschall, Tobias
Publicado 2022

The Role of Genetic Ancestry as a Risk Factor for Primary Open-angle Glaucoma in African Americans

por Cole, Brian S., Gudiseva, Harini V., Pistilli, Maxwell, Salowe, Rebecca, McHugh, Caitlin P., Zody, Michael C., Chavali, Venkata R. M., Ying, Gui Shuang, Moore, Jason H., O'Brien, Joan M.
Publicado 2021

Complete viral RNA genome sequencing of ultra-low copy samples by sequence-independent amplification

por Malboeuf, Christine M., Yang, Xiao, Charlebois, Patrick, Qu, James, Berlin, Aaron M., Casali, Monica, Pesko, Kendra N., Boutwell, Christian L., DeVincenzo, John P., Ebel, Gregory D., Allen, Todd M., Zody, Michael C., Henn, Matthew R., Levin, Joshua Z.
Publicado 2013

Genetic Predisposition to Neurological Complications in Patients with COVID-19

por Sahajpal, Nikhil Shri, Hastie, Alex R., Schieck, Maximilian, Mondal, Ashis K., Felde, Marc, van der Made, Caspar I., Chou, Janet S., Randolph, Adrienne G., Illig, Thomas, Zody, Michael C., Brownstein, Catherine A., Beggs, Alan H., Hoischen, Alexander, Chaubey, Alka, Kolhe, Ravindra
Publicado 2023

The Rose-comb Mutation in Chickens Constitutes a Structural Rearrangement Causing Both Altered Comb Morphology and Defective Sperm Motility

por Imsland, Freyja, Feng, Chungang, Boije, Henrik, Bed'hom, Bertrand, Fillon, Valérie, Dorshorst, Ben, Rubin, Carl-Johan, Liu, Ranran, Gao, Yu, Gu, Xiaorong, Wang, Yanqiang, Gourichon, David, Zody, Michael C., Zecchin, William, Vieaud, Agathe, Tixier-Boichard, Michèle, Hu, Xiaoxiang, Hallböök, Finn, Li, Ning, Andersson, Leif
Publicado 2012

Characterization of a Novel Orthomyxo-like Virus Causing Mass Die-Offs of Tilapia

por Bacharach, Eran, Mishra, Nischay, Briese, Thomas, Zody, Michael C., Kembou Tsofack, Japhette Esther, Zamostiano, Rachel, Berkowitz, Asaf, Ng, James, Nitido, Adam, Corvelo, André, Toussaint, Nora C., Abel Nielsen, Sandra Cathrine, Hornig, Mady, Del Pozo, Jorge, Bloom, Toby, Ferguson, Hugh, Eldar, Avi, Lipkin, W. Ian
Publicado 2016

Molecular and Clinical Epidemiology of SARS-CoV-2 Infection among Vaccinated and Unvaccinated Individuals in a Large Healthcare Organization from New Jersey

por Mediavilla, José R., Lozy, Tara, Lee, Annie, Kim, Justine, Kan, Veronica W., Titova, Elizabeth, Amin, Ashish, Zody, Michael C., Corvelo, André, Oschwald, Dayna M., Baldwin, Amy, Fennessey, Samantha, Zuckerman, Jerry M., Kirn, Thomas, Chen, Liang, Zhao, Yanan, Chow, Kar Fai, Maniatis, Tom, Perlin, David S., Kreiswirth, Barry N.
Publicado 2023