Genome-driven evolutionary game theory helps understand the rise of metabolic interdependencies in microbial communities

por Zomorrodi, Ali R., Segrè, Daniel
Publicado 2017

Improving the iMM904 S. cerevisiae metabolic model using essentiality and synthetic lethality data

por Zomorrodi, Ali R, Maranas, Costas D
Publicado 2010

OptCom: A Multi-Level Optimization Framework for the Metabolic Modeling and Analysis of Microbial Communities

por Zomorrodi, Ali R., Maranas, Costas D.
Publicado 2012

k-OptForce: Integrating Kinetics with Flux Balance Analysis for Strain Design

por Chowdhury, Anupam, Zomorrodi, Ali R., Maranas, Costas D.
Publicado 2014

Computational design and engineering of an Escherichia coli strain producing the nonstandard amino acid para-aminophenylalanine

por Zomorrodi, Ali R., Hemez, Colin, Arranz-Gibert, Pol, Wu, Terrence, Isaacs, Farren J., Segrè, Daniel
Publicado 2022

Microbiota and Metabolomic Patterns in the Breast Milk of Subjects with Celiac Disease on a Gluten-Free Diet

por Olshan, Katherine L., Zomorrodi, Ali R., Pujolassos, Meritxell, Troisi, Jacopo, Khan, Nayeim, Fanelli, Brian, Kenyon, Victoria, Fasano, Alessio, Leonard, Maureen M.
Publicado 2021

Down-Regulation of HtrA1 Activates the Epithelial-Mesenchymal Transition and ATM DNA Damage Response Pathways

por Wang, Ning, Eckert, Kristin A., Zomorrodi, Ali R., Xin, Ping, Pan, Weihua, Shearer, Debra A., Weisz, Judith, Maranus, Costas D., Clawson, Gary A.
Publicado 2012

Characterization of the blood microbiota in children with Celiac disease

por Mehrotra, Isha, Serena, Gloria, Cetinbas, Murat, Kenyon, Victoria, Martin, Victoria M., Harshman, Stephanie G., Zomorrodi, Ali R., Sadreyev, Ruslan I., Fasano, Alessio, Leonard, Maureen M.
Publicado 2021

Multi-omics analysis reveals the influence of genetic and environmental risk factors on developing gut microbiota in infants at risk of celiac disease

por Leonard, Maureen M., Karathia, Hiren, Pujolassos, Meritxell, Troisi, Jacopo, Valitutti, Francesco, Subramanian, Poorani, Camhi, Stephanie, Kenyon, Victoria, Colucci, Angelo, Serena, Gloria, Cucchiara, Salvatore, Montuori, Monica, Malamisura, Basilio, Francavilla, Ruggiero, Elli, Luca, Fanelli, Brian, Colwell, Rita, Hasan, Nur, Zomorrodi, Ali R., Fasano, Alessio
Publicado 2020

Microbiome signatures of progression toward celiac disease onset in at-risk children in a longitudinal prospective cohort study

por Leonard, Maureen M., Valitutti, Francesco, Karathia, Hiren, Pujolassos, Meritxell, Kenyon, Victoria, Fanelli, Brian, Troisi, Jacopo, Subramanian, Poorani, Camhi, Stephanie, Colucci, Angelo, Serena, Gloria, Cucchiara, Salvatore, Trovato, Chiara Maria, Malamisura, Basilio, Francavilla, Ruggiero, Elli, Luca, Hasan, Nur A., Zomorrodi, Ali R., Colwell, Rita, Fasano, Alessio
Publicado 2021