Spectral consensus strategy for accurate reconstruction of large biological networks

por Affeldt, Séverine, Sokolovska, Nataliya, Prifti, Edi, Zucker, Jean-Daniel
Publicado 2016

No wisdom in the crowd: genome annotation in the era of big data – current status and future prospects

por Danchin, Antoine, Ouzounis, Christos, Tokuyasu, Taku, Zucker, Jean‐Daniel
Publicado 2018

Qluster: An easy-to-implement generic workflow for robust clustering of health data

por Esnault, Cyril, Rollot, Melissa, Guilmin, Pauline, Zucker, Jean-Daniel
Publicado 2023

Sparse Zero-Sum Games as Stable Functional Feature Selection

por Sokolovska, Nataliya, Teytaud, Olivier, Rizkalla, Salwa, Clément, Karine, Zucker, Jean-Daniel
Publicado 2015

Q-Finder: An Algorithm for Credible Subgroup Discovery in Clinical Data Analysis — An Application to the International Diabetes Management Practice Study

por Esnault, Cyril, Gadonna, May-Line, Queyrel, Maxence, Templier, Alexandre, Zucker, Jean-Daniel
Publicado 2020

Interpretable and accurate prediction models for metagenomics data

por Prifti, Edi, Chevaleyre, Yann, Hanczar, Blaise, Belda, Eugeni, Danchin, Antoine, Clément, Karine, Zucker, Jean-Daniel
Publicado 2020

Exploring Semi-Quantitative Metagenomic Studies Using Oxford Nanopore Sequencing: A Computational and Experimental Protocol

por Alili, Rohia, Belda, Eugeni, Le, Phuong, Wirth, Thierry, Zucker, Jean-Daniel, Prifti, Edi, Clément, Karine
Publicado 2021

LiSA: an assisted literature search pipeline for detecting serious adverse drug events with deep learning

por Martenot, Vincent, Masdeu, Valentin, Cupe, Jean, Gehin, Faustine, Blanchon, Margot, Dauriat, Julien, Horst, Alexander, Renaudin, Michael, Girard, Philippe, Zucker, Jean-Daniel
Publicado 2022

The niche reduction approach: an opportunity for optimal control of infectious diseases in low-income countries?

por Roche, Benjamin, Broutin, Hélène, Choisy, Marc, Godreuil, Sylvain, de Magny, Guillaume Constantin, Chevaleyre, Yann, Zucker, Jean-Daniel, Breban, Romulus, Cazelles, Bernard, Simard, Frédéric
Publicado 2014

Characterization of the Gut Microbiota in Individuals with Overweight or Obesity during a Real-World Weight Loss Dietary Program: A Focus on the Bacteroides 2 Enterotype

por Alili, Rohia, Belda, Eugeni, Fabre, Odile, Pelloux, Véronique, Giordano, Nils, Legrand, Rémy, Bel Lassen, Pierre, Swartz, Timothy D., Zucker, Jean-Daniel, Clément, Karine
Publicado 2021

Fibrosis in Human Adipose Tissue: Composition, Distribution, and Link With Lipid Metabolism and Fat Mass Loss

por Divoux, Adeline, Tordjman, Joan, Lacasa, Danièle, Veyrie, Nicolas, Hugol, Danielle, Aissat, Abdelhalim, Basdevant, Arnaud, Guerre-Millo, Michèle, Poitou, Christine, Zucker, Jean-Daniel, Bedossa, Pierre, Clément, Karine
Publicado 2010

From correlation to causality: the case of Subdoligranulum

por Van Hul, Matthias, Le Roy, Tiphaine, Prifti, Edi, Dao, Maria Carlota, Paquot, Adrien, Zucker, Jean-Daniel, Delzenne, Nathalie M., Muccioli, Giulio G., Clément, Karine, Cani, Patrice D.
Publicado 2020

Adipose tissue transcriptomic signature highlights the pathological relevance of extracellular matrix in human obesity

por Henegar, Corneliu, Tordjman, Joan, Achard, Vincent, Lacasa, Danièle, Cremer, Isabelle, Guerre-Millo, Michèle, Poitou, Christine, Basdevant, Arnaud, Stich, Vladimir, Viguerie, Nathalie, Langin, Dominique, Bedossa, Pierre, Zucker, Jean-Daniel, Clement, Karine
Publicado 2008

Protein supplementation during an energy-restricted diet induces visceral fat loss and gut microbiota amino acid metabolism activation: a randomized trial

por Bel Lassen, Pierre, Belda, Eugeni, Prifti, Edi, Dao, Maria Carlota, Specque, Florian, Henegar, Corneliu, Rinaldi, Laure, Wang, Xuedan, Kennedy, Sean P., Zucker, Jean-Daniel, Calame, Wim, Lamarche, Benoît, Claus, Sandrine P., Clément, Karine
Publicado 2021

Adipose Gene Expression Prior to Weight Loss Can Differentiate and Weakly Predict Dietary Responders

por Mutch, David M., Temanni, M. Ramzi, Henegar, Corneliu, Combes, Florence, Pelloux, Véronique, Holst, Claus, Sørensen, Thorkild I. A., Astrup, Arne, Martinez, J. Alfredo, Saris, Wim H. M., Viguerie, Nathalie, Langin, Dominique, Zucker, Jean-Daniel, Clément, Karine
Publicado 2007

Dietary Patterns Differently Associate with Inflammation and Gut Microbiota in Overweight and Obese Subjects

por Kong, Ling Chun, Holmes, Bridget A., Cotillard, Aurelie, Habi-Rachedi, Fatiha, Brazeilles, Rémi, Gougis, Sophie, Gausserès, Nicolas, Cani, Patrice D., Fellahi, Soraya, Bastard, Jean-Philippe, Kennedy, Sean P., Doré, Joel, Ehrlich, Stanislav Dusko, Zucker, Jean-Daniel, Rizkalla, Salwa W., Clément, Karine
Publicado 2014

The human gut microbiota contributes to type-2 diabetes non-resolution 5-years after Roux-en-Y gastric bypass

por Debédat, Jean, Le Roy, Tiphaine, Voland, Lise, Belda, Eugeni, Alili, Rohia, Adriouch, Solia, Bel Lassen, Pierre, Kasahara, Kazuyuki, Hutchison, Evan, Genser, Laurent, Torres, Licia, Gamblin, Camille, Rouault, Christine, Zucker, Jean-Daniel, Kapel, Nathalie, Poitou, Christine, Marcelin, Geneviève, Rey, Federico E., Aron-Wisnewsky, Judith, Clément, Karine
Publicado 2022

A Data Integration Multi-Omics Approach to Study Calorie Restriction-Induced Changes in Insulin Sensitivity

por Dao, Maria Carlota, Sokolovska, Nataliya, Brazeilles, Rémi, Affeldt, Séverine, Pelloux, Véronique, Prifti, Edi, Chilloux, Julien, Verger, Eric O., Kayser, Brandon D., Aron-Wisnewsky, Judith, Ichou, Farid, Pujos-Guillot, Estelle, Hoyles, Lesley, Juste, Catherine, Doré, Joël, Dumas, Marc-Emmanuel, Rizkalla, Salwa W., Holmes, Bridget A., Zucker, Jean-Daniel, Clément, Karine
Publicado 2019

Gut Microbiota Profile of Obese Diabetic Women Submitted to Roux-en-Y Gastric Bypass and Its Association with Food Intake and Postoperative Diabetes Remission

por Al Assal, Karina, Prifti, Edi, Belda, Eugeni, Sala, Priscila, Clément, Karine, Dao, Maria-Carlota, Doré, Joel, Levenez, Florence, Taddei, Carla R., Fonseca, Danielle Cristina, Rocha, Ilanna Marques, Balmant, Bianca Depieri, Thomas, Andrew Maltez, Santo, Marco A., Dias-Neto, Emmanuel, Setubal, João Carlos, Zucker, Jean-Daniel, Belarmino, Giliane, Torrinhas, Raquel Susana, Waitzberg, Dan L.
Publicado 2020

Imidazole propionate is increased in diabetes and associated with dietary patterns and altered microbial ecology

por Molinaro, Antonio, Bel Lassen, Pierre, Henricsson, Marcus, Wu, Hao, Adriouch, Solia, Belda, Eugeni, Chakaroun, Rima, Nielsen, Trine, Bergh, Per-Olof, Rouault, Christine, André, Sébastien, Marquet, Florian, Andreelli, Fabrizio, Salem, Joe-Elie, Assmann, Karen, Bastard, Jean-Philippe, Forslund, Sofia, Le Chatelier, Emmanuelle, Falony, Gwen, Pons, Nicolas, Prifti, Edi, Quinquis, Benoit, Roume, Hugo, Vieira-Silva, Sara, Hansen, Tue H., Pedersen, Helle Krogh, Lewinter, Christian, Sønderskov, Nadja B., Køber, Lars, Vestergaard, Henrik, Hansen, Torben, Zucker, Jean-Daniel, Galan, Pilar, Dumas, Marc-Emmanuel, Raes, Jeroen, Oppert, Jean-Michel, Letunic, Ivica, Nielsen, Jens, Bork, Peer, Ehrlich, S. Dusko, Stumvoll, Michael, Pedersen, Oluf, Aron-Wisneswky, Judith, Clément, Karine, Bäckhed, Fredrik
Publicado 2020