CIRCUS: a package for Circos display of structural genome variations from paired-end and mate-pair sequencing data

por Naquin, Delphine, d’Aubenton-Carafa, Yves, Thermes, Claude, Silvain, Maud
Publicado 2014

DNA physical properties determine nucleosome occupancy from yeast to fly

por Miele, Vincent, Vaillant, Cédric, d'Aubenton-Carafa, Yves, Thermes, Claude, Grange, Thierry
Publicado 2008

OKseqHMM: a genome-wide replication fork directionality analysis toolkit

por Liu, Yaqun, Wu, Xia, d’Aubenton-Carafa, Yves, Thermes, Claude, Chen, Chun-Long
Publicado 2023

Complete Sequence of the Intronless Mitochondrial Genome of the Saccharomyces cerevisiae Strain CW252

por Naquin, Delphine, Panozzo, Cristina, Dujardin, Geneviève, van Dijk, Erwin, d’Aubenton-Carafa, Yves, Thermes, Claude
Publicado 2018

Open chromatin encoded in DNA sequence is the signature of ‘master’ replication origins in human cells

por Audit, Benjamin, Zaghloul, Lamia, Vaillant, Cédric, Chevereau, Guillaume, d'Aubenton-Carafa, Yves, Thermes, Claude, Arneodo, Alain
Publicado 2009

Systematic comparison of small RNA library preparation protocols for next-generation sequencing

por Dard-Dascot, Cloelia, Naquin, Delphine, d’Aubenton-Carafa, Yves, Alix, Karine, Thermes, Claude, van Dijk, Erwin
Publicado 2018

Neurodevelopment Genes in Lampreys Reveal Trends for Forebrain Evolution in Craniates

por Guérin, Adèle, d'Aubenton-Carafa, Yves, Marrakchi, Emna, Da Silva, Corinne, Wincker, Patrick, Mazan, Sylvie, Rétaux, Sylvie
Publicado 2009

Replication landscape of the human genome

por Petryk, Nataliya, Kahli, Malik, d'Aubenton-Carafa, Yves, Jaszczyszyn, Yan, Shen, Yimin, Silvain, Maud, Thermes, Claude, Chen, Chun-Long, Hyrien, Olivier
Publicado 2016

Evidence for Sequential and Increasing Activation of Replication Origins along Replication Timing Gradients in the Human Genome

por Guilbaud, Guillaume, Rappailles, Aurélien, Baker, Antoine, Chen, Chun-Long, Arneodo, Alain, Goldar, Arach, d'Aubenton-Carafa, Yves, Thermes, Claude, Audit, Benjamin, Hyrien, Olivier
Publicado 2011

Replication Fork Polarity Gradients Revealed by Megabase-Sized U-Shaped Replication Timing Domains in Human Cell Lines

por Baker, Antoine, Audit, Benjamin, Chen, Chun-Long, Moindrot, Benoit, Leleu, Antoine, Guilbaud, Guillaume, Rappailles, Aurélien, Vaillant, Cédric, Goldar, Arach, Mongelard, Fabien, d'Aubenton-Carafa, Yves, Hyrien, Olivier, Thermes, Claude, Arneodo, Alain
Publicado 2012

BRASERO: A Resource for Benchmarking RNA Secondary Structure Comparison Algorithms

por Allali, Julien, Saule, Cédric, Chauve, Cédric, d'Aubenton-Carafa, Yves, Denise, Alain, Drevet, Christine, Ferraro, Pascal, Gautheret, Daniel, Herrbach, Claire, Leclerc, Fabrice, de Monte, Antoine, Ouangraoua, Aida, Sagot, Marie-France, Termier, Michel, Thermes, Claude, Touzet, Hélène
Publicado 2012