ViralZone: a knowledge resource to understand virus diversity

por Hulo, Chantal, de Castro, Edouard, Masson, Patrick, Bougueleret, Lydie, Bairoch, Amos, Xenarios, Ioannis, Le Mercier, Philippe
Publicado 2011

PROSITE, a protein domain database for functional characterization and annotation

por Sigrist, Christian J. A., Cerutti, Lorenzo, de Castro, Edouard, Langendijk-Genevaux, Petra S., Bulliard, Virginie, Bairoch, Amos, Hulo, Nicolas
Publicado 2010

The PROSITE database

por Hulo, Nicolas, Bairoch, Amos, Bulliard, Virginie, Cerutti, Lorenzo, De Castro, Edouard, Langendijk-Genevaux, Petra S., Pagni, Marco, Sigrist, Christian J. A.
Publicado 2006

ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins

por de Castro, Edouard, Sigrist, Christian J. A., Gattiker, Alexandre, Bulliard, Virginie, Langendijk-Genevaux, Petra S., Gasteiger, Elisabeth, Bairoch, Amos, Hulo, Nicolas
Publicado 2006

ViralZone: recent updates to the virus knowledge resource

por Masson, Patrick, Hulo, Chantal, De Castro, Edouard, Bitter, Hans, Gruenbaum, Lore, Essioux, Laurent, Bougueleret, Lydie, Xenarios, Ioannis, Le Mercier, Philippe
Publicado 2013

New and continuing developments at PROSITE

por Sigrist, Christian J. A., de Castro, Edouard, Cerutti, Lorenzo, Cuche, Béatrice A., Hulo, Nicolas, Bridge, Alan, Bougueleret, Lydie, Xenarios, Ioannis
Publicado 2013

Annotation of biologically relevant ligands in UniProtKB using ChEBI

por Coudert, Elisabeth, Gehant, Sebastien, de Castro, Edouard, Pozzato, Monica, Baratin, Delphine, Neto, Teresa, Sigrist, Christian J A, Redaschi, Nicole, Bridge, Alan
Publicado 2022

An Integrated Ontology Resource to Explore and Study Host-Virus Relationships

por Masson, Patrick, Hulo, Chantal, de Castro, Edouard, Foulger, Rebecca, Poux, Sylvain, Bridge, Alan, Lomax, Jane, Bougueleret, Lydie, Xenarios, Ioannis, Le Mercier, Philippe
Publicado 2014

The 20 years of PROSITE

por Hulo, Nicolas, Bairoch, Amos, Bulliard, Virginie, Cerutti, Lorenzo, Cuche, Béatrice A., de Castro, Edouard, Lachaize, Corinne, Langendijk-Genevaux, Petra S., Sigrist, Christian J. A.
Publicado 2008

The ins and outs of eukaryotic viruses: Knowledge base and ontology of a viral infection

por Hulo, Chantal, Masson, Patrick, de Castro, Edouard, Auchincloss, Andrea H., Foulger, Rebecca, Poux, Sylvain, Lomax, Jane, Bougueleret, Lydie, Xenarios, Ioannis, Le Mercier, Philippe
Publicado 2017

Bacterial Virus Ontology; Coordinating across Databases

por Hulo, Chantal, Masson, Patrick, Toussaint, Ariane, Osumi-Sutherland, David, de Castro, Edouard, Auchincloss, Andrea H., Poux, Sylvain, Bougueleret, Lydie, Xenarios, Ioannis, Le Mercier, Philippe
Publicado 2017

HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot

por Lima, Tania, Auchincloss, Andrea H., Coudert, Elisabeth, Keller, Guillaume, Michoud, Karine, Rivoire, Catherine, Bulliard, Virginie, de Castro, Edouard, Lachaize, Corinne, Baratin, Delphine, Phan, Isabelle, Bougueleret, Lydie, Bairoch, Amos
Publicado 2009

HAMAP in 2013, new developments in the protein family classification and annotation system

por Pedruzzi, Ivo, Rivoire, Catherine, Auchincloss, Andrea H., Coudert, Elisabeth, Keller, Guillaume, de Castro, Edouard, Baratin, Delphine, Cuche, Béatrice A., Bougueleret, Lydie, Poux, Sylvain, Redaschi, Nicole, Xenarios, Ioannis, Bridge, Alan
Publicado 2013

HAMAP in 2015: updates to the protein family classification and annotation system

por Pedruzzi, Ivo, Rivoire, Catherine, Auchincloss, Andrea H., Coudert, Elisabeth, Keller, Guillaume, de Castro, Edouard, Baratin, Delphine, Cuche, Béatrice A., Bougueleret, Lydie, Poux, Sylvain, Redaschi, Nicole, Xenarios, Ioannis, Bridge, Alan
Publicado 2014

HAMAP as SPARQL rules—A portable annotation pipeline for genomes and proteomes

por Bolleman, Jerven, de Castro, Edouard, Baratin, Delphine, Gehant, Sebastien, Cuche, Beatrice A, Auchincloss, Andrea H, Coudert, Elisabeth, Hulo, Chantal, Masson, Patrick, Pedruzzi, Ivo, Rivoire, Catherine, Xenarios, Ioannis, Redaschi, Nicole, Bridge, Alan
Publicado 2020

Enzyme annotation in UniProtKB using Rhea

por Morgat, Anne, Lombardot, Thierry, Coudert, Elisabeth, Axelsen, Kristian, Neto, Teresa Batista, Gehant, Sebastien, Bansal, Parit, Bolleman, Jerven, Gasteiger, Elisabeth, de Castro, Edouard, Baratin, Delphine, Pozzato, Monica, Xenarios, Ioannis, Poux, Sylvain, Redaschi, Nicole, Bridge, Alan
Publicado 2020

Genome and transcriptome sequencing identifies breeding targets in the orphan crop tef (Eragrostis tef)

por Cannarozzi, Gina, Plaza-Wüthrich, Sonia, Esfeld, Korinna, Larti, Stéphanie, Wilson, Yi Song, Girma, Dejene, de Castro, Edouard, Chanyalew, Solomon, Blösch, Regula, Farinelli, Laurent, Lyons, Eric, Schneider, Michel, Falquet, Laurent, Kuhlemeier, Cris, Assefa, Kebebew, Tadele, Zerihun
Publicado 2014

SwissBioPics—an interactive library of cell images for the visualization of subcellular location data

por Le Mercier, Philippe, Bolleman, Jerven, de Castro, Edouard, Gasteiger, Elisabeth, Bansal, Parit, Auchincloss, Andrea H, Boutet, Emmanuel, Breuza, Lionel, Casals-Casas, Cristina, Estreicher, Anne, Feuermann, Marc, Lieberherr, Damien, Rivoire, Catherine, Pedruzzi, Ivo, Redaschi, Nicole, Bridge, Alan
Publicado 2022

Diverse Taxonomies for Diverse Chemistries: Enhanced Representation of Natural Product Metabolism in UniProtKB

por Feuermann, Marc, Boutet, Emmanuel, Morgat, Anne, Axelsen, Kristian B., Bansal, Parit, Bolleman, Jerven, de Castro, Edouard, Coudert, Elisabeth, Gasteiger, Elisabeth, Géhant, Sébastien, Lieberherr, Damien, Lombardot, Thierry, Neto, Teresa B., Pedruzzi, Ivo, Poux, Sylvain, Pozzato, Monica, Redaschi, Nicole, Bridge, Alan
Publicado 2021

ExPASy: SIB bioinformatics resource portal

por Artimo, Panu, Jonnalagedda, Manohar, Arnold, Konstantin, Baratin, Delphine, Csardi, Gabor, de Castro, Edouard, Duvaud, Séverine, Flegel, Volker, Fortier, Arnaud, Gasteiger, Elisabeth, Grosdidier, Aurélien, Hernandez, Céline, Ioannidis, Vassilios, Kuznetsov, Dmitry, Liechti, Robin, Moretti, Sébastien, Mostaguir, Khaled, Redaschi, Nicole, Rossier, Grégoire, Xenarios, Ioannis, Stockinger, Heinz
Publicado 2012