Optimal proteome allocation and the temperature dependence of microbial growth laws

por Mairet, Francis, Gouzé, Jean-Luc, de Jong, Hidde
Publicado 2021

An ensemble of mathematical models showing diauxic growth behaviour

por Kremling, Andreas, Geiselmann, Johannes, Ropers, Delphine, de Jong, Hidde
Publicado 2018

WellInverter: a web application for the analysis of fluorescent reporter gene data

por Martin, Yannick, Page, Michel, Blanchet, Christophe, de Jong, Hidde
Publicado 2019

Acetate Metabolism and the Inhibition of Bacterial Growth by Acetate

por Pinhal, Stéphane, Ropers, Delphine, Geiselmann, Johannes, de Jong, Hidde
Publicado 2019

Enhanced production of heterologous proteins by a synthetic microbial community: Conditions and trade-offs

por Mauri, Marco, Gouzé, Jean-Luc, de Jong, Hidde, Cinquemani, Eugenio
Publicado 2020

Experimental and computational validation of models of fluorescent and luminescent reporter genes in bacteria

por de Jong, Hidde, Ranquet, Caroline, Ropers, Delphine, Pinel, Corinne, Geiselmann, Johannes
Publicado 2010

Identification of metabolic network models from incomplete high-throughput datasets

por Berthoumieux, Sara, Brilli, Matteo, de Jong, Hidde, Kahn, Daniel, Cinquemani, Eugenio
Publicado 2011

The logic layout of the TOL network of Pseudomonas putida pWW0 plasmid stems from a metabolic amplifier motif (MAM) that optimizes biodegradation of m-xylene

por Silva-Rocha, Rafael, de Jong, Hidde, Tamames, Javier, de Lorenzo, Víctor
Publicado 2011

Robust reconstruction of gene expression profiles from reporter gene data using linear inversion

por Zulkower, Valentin, Page, Michel, Ropers, Delphine, Geiselmann, Johannes, de Jong, Hidde
Publicado 2015

Resource allocation accounts for the large variability of rate-yield phenotypes across bacterial strains

por Baldazzi, Valentina, Ropers, Delphine, Gouzé, Jean-Luc, Gedeon, Tomas, de Jong, Hidde
Publicado 2023

Dynamical Allocation of Cellular Resources as an Optimal Control Problem: Novel Insights into Microbial Growth Strategies

por Giordano, Nils, Mairet, Francis, Gouzé, Jean-Luc, Geiselmann, Johannes, de Jong, Hidde
Publicado 2016

Estimation of time-varying growth, uptake and excretion rates from dynamic metabolomics data

por Cinquemani, Eugenio, Laroute, Valérie, Cocaign-Bousquet, Muriel, de Jong, Hidde, Ropers, Delphine
Publicado 2017

The Carbon Assimilation Network in Escherichia coli Is Densely Connected and Largely Sign-Determined by Directions of Metabolic Fluxes

por Baldazzi, Valentina, Ropers, Delphine, Markowicz, Yves, Kahn, Daniel, Geiselmann, Johannes, de Jong, Hidde
Publicado 2010

Correction: The Carbon Assimilation Network in Escherichia coli Is Densely Connected and Largely Sign-Determined by Directions of Metabolic Fluxes

por Baldazzi, Valentina, Ropers, Delphine, Markowicz, Yves, Kahn, Daniel, Geiselmann, Johannes, de Jong, Hidde
Publicado 2010

Efficient parameter search for qualitative models of regulatory networks using symbolic model checking

por Batt, Gregory, Page, Michel, Cantone, Irene, Goessler, Gregor, Monteiro, Pedro, de Jong, Hidde
Publicado 2010

Inference of Quantitative Models of Bacterial Promoters from Time-Series Reporter Gene Data

por Stefan, Diana, Pinel, Corinne, Pinhal, Stéphane, Cinquemani, Eugenio, Geiselmann, Johannes, de Jong, Hidde
Publicado 2015

A service-oriented architecture for integrating the modeling and formal verification of genetic regulatory networks

por Monteiro, Pedro T, Dumas, Estelle, Besson, Bruno, Mateescu, Radu, Page, Michel, Freitas, Ana T, de Jong, Hidde
Publicado 2009

Shared control of gene expression in bacteria by transcription factors and global physiology of the cell

por Berthoumieux, Sara, de Jong, Hidde, Baptist, Guillaume, Pinel, Corinne, Ranquet, Caroline, Ropers, Delphine, Geiselmann, Johannes
Publicado 2013

A genome-wide screen for identifying all regulators of a target gene

por Baptist, Guillaume, Pinel, Corinne, Ranquet, Caroline, Izard, Jérôme, Ropers, Delphine, de Jong, Hidde, Geiselmann, Johannes
Publicado 2013

A synthetic growth switch based on controlled expression of RNA polymerase

por Izard, Jérôme, Gomez Balderas, Cindy DC, Ropers, Delphine, Lacour, Stephan, Song, Xiaohu, Yang, Yifan, Lindner, Ariel B, Geiselmann, Johannes, de Jong, Hidde
Publicado 2015