The utility of Escherichia coli as a contamination indicator for rural drinking water: Evidence from whole genome sequencing

por Nowicki, Saskia, deLaurent, Zaydah R., de Villiers, Etienne P., Githinji, George, Charles, Katrina J.
Publicado 2021

Genome Sequences of Human Coronavirus OC43 and NL63, Associated with Respiratory Infections in Kilifi, Kenya

por Kamau, Everlyn, Luka, Martha M., de Laurent, Zaydah R., Adema, Irene, Agoti, Charles N., Nokes, D. James
Publicado 2019

Near-Complete Genome Sequences of Eight Human Astroviruses Recovered from Diarrheal Stool Samples of Hospitalized Children in Coastal Kenya in 2019

por Lambisia, Arnold W., Phan, My V. T., de Laurent, Zaydah R., Cotten, Matthew, Nokes, D. James, Agoti, Charles N.
Publicado 2021

Whole genome sequencing and phylogenetic analysis of human metapneumovirus strains from Kenya and Zambia

por Kamau, Everlyn, Oketch, John W., de Laurent, Zaydah R., Phan, My V. T., Agoti, Charles N., Nokes, D. James, Cotten, Matthew
Publicado 2020

Correction to: Whole genome sequencing and phylogenetic analysis of human metapneumovirus strains from Kenya and Zambia

por Kamau, Everlyn, Oketch, John W., de Laurent, Zaydah R., Phan, My V. T., Agoti, Charles N., Nokes, D. James, Cotten, Matthew
Publicado 2020

Whole genome sequencing of two human rhinovirus A types (A101 and A15) detected in Kenya, 2016-2018

por Luka, Martha M., Kamau, Everlyn, de Laurent, Zaydah R., Morobe, John Mwita, Alii, Leonard K., Nokes, D. James, Agoti, Charles N.
Publicado 2021

Maintenance of high temporal Plasmodium falciparum genetic diversity and complexity of infection in asymptomatic and symptomatic infections in Kilifi, Kenya from 2007 to 2018

por Kimenyi, Kelvin M., Wamae, Kevin, Ngoi, Joyce M., de Laurent, Zaydah R., Ndwiga, Leonard, Osoti, Victor, Obiero, George, Abdi, Abdirahman I., Bejon, Philip, Ochola-Oyier, Lynette Isabella
Publicado 2022

Genomic epidemiology and evolutionary dynamics of respiratory syncytial virus group B in Kilifi, Kenya, 2015–17

por Kamau, Everlyn, Otieno, James R, Murunga, Nickson, Oketch, John W, Ngoi, Joyce M, de Laurent, Zaydah R, Mwema, Anthony, Nyiro, Joyce U, Agoti, Charles N, Nokes, D James
Publicado 2020

Complete Genome Sequences of Dengue Virus Type 2 Strains from Kilifi, Kenya

por Kamau, Everlyn, Agoti, Charles N., Ngoi, Joyce M., de Laurent, Zaydah R., Gitonga, John, Cotten, Matthew, Phan, My V. T., Nokes, D. James, Delwart, Eric, Sanders, Eduard, Warimwe, George M.
Publicado 2019

Amplicon Sequencing as a Potential Surveillance Tool for Complexity of Infection and Drug Resistance Markers in Plasmodium falciparum Asymptomatic Infections( )

por Wamae, Kevin, Kimenyi, Kelvin M, Osoti, Victor, de Laurent, Zaydah R, Ndwiga, Leonard, Kharabora, Oksana, Hathaway, Nicholas J, Bailey, Jeffrey A, Juliano, Jonathan J, Bejon, Philip, Ochola-Oyier, Lynette Isabella
Publicado 2022

Cessation of exclusive breastfeeding and seasonality, but not small intestinal bacterial overgrowth, are associated with environmental enteric dysfunction: A birth cohort study amo...

por Crane, Rosie J., Parker, Edward P.K., Fleming, Simon, Gwela, Agnes, Gumbi, Wilson, Ngoi, Joyce M., de Laurent, Zaydah R., Nyatichi, Emily, Ngari, Moses, Wambua, Juliana, Uhlig, Holm H., Berkley, James A.
Publicado 2022

Genomic epidemiology of the rotavirus G2P[4] strains in coastal Kenya pre- and post-rotavirus vaccine introduction, 2012–8

por Makori, Timothy O, Bargul, Joel L, Lambisia, Arnold W, Mwanga, Mike J, Murunga, Nickson, de Laurent, Zaydah R, Lewa, Clement S, Mutunga, Martin, Kellam, Paul, Cotten, Matthew, Nokes, D James, Phan, My, Agoti, Charles N
Publicado 2023

Phylogenomic analysis uncovers a 9-year variation of Uganda influenza type-A strains from the WHO-recommended vaccines and other Africa strains

por Nabakooza, Grace, Owuor, D. Collins, de Laurent, Zaydah R., Galiwango, Ronald, Owor, Nicholas, Kayiwa, John T., Jjingo, Daudi, Agoti, Charles N., Nokes, D. James, Kateete, David P., Kitayimbwa, John M., Frost, Simon D. W., Lutwama, Julius J.
Publicado 2023

Characterizing the Countrywide Epidemic Spread of Influenza A(H1N1)pdm09 Virus in Kenya between 2009 and 2018

por Owuor, D. Collins, de Laurent, Zaydah R., Kikwai, Gilbert K., Mayieka, Lillian M., Ochieng, Melvin, Müller, Nicola F., Otieno, Nancy A., Emukule, Gideon O., Hunsperger, Elizabeth A., Garten, Rebecca, Barnes, John R., Chaves, Sandra S., Nokes, D. James, Agoti, Charles N.
Publicado 2021

Incidence of chikungunya virus infections among Kenyan children with neurological disease, 2014–2018: A cohort study

por Nyamwaya, Doris K., Otiende, Mark, Mwango, Lilian, Kariuki, Symon M., Otieno, Berrick, Omuoyo, Donwilliams O., Githinji, George, Kitsao, Barnes S., Karanja, Henry K., Gitonga, John N., de Laurent, Zaydah R., Davies, Alun, Mwarumba, Salim, Agoti, Charles N., Thumbi, Samuel M., Hamaluba, Mainga M., Newton, Charles R., Bejon, Philip, Warimwe, George M.
Publicado 2022

Tracking the introduction and spread of SARS-CoV-2 in coastal Kenya

por Githinji, George, de Laurent, Zaydah R., Mohammed, Khadija Said, Omuoyo, Donwilliams O., Macharia, Peter M., Morobe, John M., Otieno, Edward, Kinyanjui, Samson M., Agweyu, Ambrose, Maitha, Eric, Kitole, Ben, Suleiman, Thani, Mwakinangu, Mohamed, Nyambu, John, Otieno, John, Salim, Barke, Kasera, Kadondi, Kiiru, John, Aman, Rashid, Barasa, Edwine, Warimwe, George, Bejon, Philip, Tsofa, Benjamin, Ochola-Oyier, Lynette Isabella, Nokes, D. James, Agoti, Charles N.
Publicado 2021

Transmission networks of SARS-CoV-2 in Coastal Kenya during the first two waves: A retrospective genomic study

por Agoti, Charles N, Ochola-Oyier, Lynette Isabella, Dellicour, Simon, Mohammed, Khadija Said, Lambisia, Arnold W, de Laurent, Zaydah R, Morobe, John M, Mburu, Maureen W, Omuoyo, Donwilliams O, Ongera, Edidah M, Ndwiga, Leonard, Maitha, Eric, Kitole, Benson, Suleiman, Thani, Mwakinangu, Mohamed, Nyambu, John K, Otieno, John, Salim, Barke, Musyoki, Jennifer, Murunga, Nickson, Otieno, Edward, Kiiru, John N, Kasera, Kadondi, Amoth, Patrick, Mwangangi, Mercy, Aman, Rashid, Kinyanjui, Samson, Warimwe, George, Phan, My, Agweyu, Ambrose, Cotten, Matthew, Barasa, Edwine, Tsofa, Benjamin, Nokes, D James, Bejon, Philip, Githinji, George
Publicado 2022

Pooled testing conserves SARS-CoV-2 laboratory resources and improves test turn-around time: experience on the Kenyan Coast

por Agoti, Charles N., Mutunga, Martin, Lambisia, Arnold W., Kimani, Domtila, Cheruiyot, Robinson, Kiyuka, Patience, Lewa, Clement, Gicheru, Elijah, Tendwa, Metrine, Said Mohammed, Khadija, Osoti, Victor, Makale, Johnstone, Tawa, Brian, Odundo, Calleb, Cheruiyot, Wesley, Nyamu, Wilfred, Gumbi, Wilson, Mwacharo, Jedidah, Nyamako, Lydia, Otieno, Edward, Amadi, David, Thoya, Janet, Karani, Angela, Mugo, Daisy, Musyoki, Jennifer, Gumba, Horace, Mwarumba, Salim, M. Gichuki, Bonface, Njuguna, Susan, Riako, Debra, Mutua, Shadrack, Gitonga, John N., Sein, Yiakon, Bartilol, Brian, Mwangi, Shaban J., O. Omuoyo, Donwilliams, M. Morobe, John, de Laurent, Zaydah R., Bejon, Philip, Ochola-Oyier, Lynette Isabella, Tsofa, Benjamin
Publicado 2021

Genomic Epidemiology of SARS-CoV-2 in Seychelles, 2020–2021

por Morobe, John Mwita, Pool, Brigitte, Marie, Lina, Didon, Dwayne, Lambisia, Arnold W., Makori, Timothy, Mohammed, Khadija Said, de Laurent, Zaydah R., Ndwiga, Leonard, Mburu, Maureen W., Moraa, Edidah, Murunga, Nickson, Musyoki, Jennifer, Mwacharo, Jedida, Nyamako, Lydia, Riako, Debra, Ephnatus, Pariken, Gambo, Faith, Naimani, Josephine, Namulondo, Joyce, Tembo, Susan Zimba, Ogendi, Edwin, Balde, Thierno, Dratibi, Fred Athanasius, Yahaya, Ali Ahmed, Gumede, Nicksy, Achilla, Rachel A., Borus, Peter K., Wanjohi, Dorcas W., Tessema, Sofonias K., Mwangangi, Joseph, Bejon, Philip, Nokes, David J., Ochola-Oyier, Lynette Isabella, Githinji, George, Biscornet, Leon, Agoti, Charles N.
Publicado 2022

An optimization of four SARS-CoV-2 qRT-PCR assays in a Kenyan laboratory to support the national COVID-19 rapid response teams

por Mohammed, Khadija Said, de Laurent, Zaydah R., Omuoyo, Donwilliams O., Lewa, Clement, Gicheru, Elijah, Cheruiyot, Robinson, Bartilol, Brian, Mutua, Shadrack, Musyoki, Jennifer, Gumba, Horace, Mwacharo, Jedidah, Riako, Debra, Mwangi, Shaban J., Gichuki, Bonface M., Nyamako, Lydia, Karani, Angela, Karanja, Henry, Mugo, Daisy, Gitonga, John N., Njuguna, Susan, Gumbi, Wilson, Tawa, Brian, Tendwa, Metrine, Cheruiyot, Wesley, Sein, Yiakon, Nyambu, John K., Patta, Shem O., Thani, Thani Suleiman, Maitha, Eric K., Kitole, Benson, Mwakinangu, Mohamed S., Muslih, Barke S., Otieno, John Ochieng, Nyiro, Joyce U., Kiyuka, Patience, Ndwiga, Leonard, Wamae, Kevin, Kimani, Domtila, Makale, Johnstone, Morobe, John Mwita, Osoti, Victor, Lambisia, Arnold W., Odundo, Calleb, Mwarumba, Salim, Mutunga, Martin, Bejon, Philip, Tsofa, Benjamin, Agoti, Charles N., Ochola-Oyier, Lynette Isabella
Publicado 2022