Infinitely long branches and an informal test of common ancestry

por de Oliveira Martins, Leonardo, Posada, David
Publicado 2016

Testing for Universal Common Ancestry

por de Oliveira Martins, Leonardo, Posada, David
Publicado 2014

Phylogenetic Detection of Recombination with a Bayesian Prior on the Distance between Trees

por de Oliveira Martins, Leonardo, Leal, Élcio, Kishino, Hirohisa
Publicado 2008

SimPhy: Phylogenomic Simulation of Gene, Locus, and Species Trees

por Mallo, Diego, De Oliveira Martins, Leonardo, Posada, David
Publicado 2016

A Bayesian Supertree Model for Genome-Wide Species Tree Reconstruction

por De Oliveira Martins, Leonardo, Mallo, Diego, Posada, David
Publicado 2016

Taxonomic resolution of the ribosomal RNA operon in bacteria: implications for its use with long-read sequencing

por de Oliveira Martins, Leonardo, Page, Andrew J, Mather, Alison E, Charles, Ian G
Publicado 2019

Phylogenomic Analyses of 2,786 Genes in 158 Lineages Support a Root of the Eukaryotic Tree of Life between Opisthokonts and All Other Lineages

por Cerón-Romero, Mario A, Fonseca, Miguel M, de Oliveira Martins, Leonardo, Posada, David, Katz, Laura A
Publicado 2022

Tatajuba: exploring the distribution of homopolymer tracts

por de Oliveira Martins, Leonardo, Bloomfield, Samuel, Stoakes, Emily, Grant, Andrew J, Page, Andrew J, Mather, Alison E
Publicado 2022

Datasets for benchmarking antimicrobial resistance genes in bacterial metagenomic and whole genome sequencing

por Raphenya, Amogelang R., Robertson, James, Jamin, Casper, de Oliveira Martins, Leonardo, Maguire, Finlay, McArthur, Andrew G., Hays, John P.
Publicado 2022

Lineage-specific positive selection at the merozoite surface protein 1 (msp1) locus of Plasmodium vivax and related simian malaria parasites

por Sawai, Hiromi, Otani, Hiroto, Arisue, Nobuko, Palacpac, Nirianne, de Oliveira Martins, Leonardo, Pathirana, Sisira, Handunnetti, Shiroma, Kawai, Satoru, Kishino, Hirohisa, Horii, Toshihiro, Tanabe, Kazuyuki
Publicado 2010

Nanoneedle-Mediated Stimulation of Cell Mechanotransduction Machinery

por Hansel, Catherine S., Crowder, Spencer W., Cooper, Samuel, Gopal, Sahana, João Pardelha da Cruz, Maria, de Oliveira Martins, Leonardo, Keller, Debora, Rothery, Stephen, Becce, Michele, Cass, Anthony E. G., Bakal, Chris, Chiappini, Ciro, Stevens, Molly M.
Publicado 2019

Surveillance of SARS-CoV-2 in Zimbabwe shows dominance of variants of concern

por Mashe, Tapfumanei, Takawira, Faustinos Tatenda, Gumbo, Hlanai, Juru, Agnes, Nyagupe, Charles, Maeka, Kenneth K, Mtapuri-Zinyowera, Sekesai, Gudza-Mugabe, Muchaneta, de Oliveira Martins, Leonardo, O'Grady, Justin, Kingsley, Robert A, Page, Andrew J, Simbi, Raiva
Publicado 2021

SARS-CoV-2 lineage dynamics in England from September to November 2021: high diversity of Delta sub-lineages and increased transmissibility of AY.4.2

por Eales, Oliver, Page, Andrew J., de Oliveira Martins, Leonardo, Wang, Haowei, Bodinier, Barbara, Haw, David, Jonnerby, Jakob, Atchison, Christina, Ashby, Deborah, Barclay, Wendy, Taylor, Graham, Cooke, Graham, Ward, Helen, Darzi, Ara, Riley, Steven, Chadeau-Hyam, Marc, Donnelly, Christl A., Elliott, Paul
Publicado 2022

Dynamics of competing SARS-CoV-2 variants during the Omicron epidemic in England

por Eales, Oliver, de Oliveira Martins, Leonardo, Page, Andrew J., Wang, Haowei, Bodinier, Barbara, Tang, David, Haw, David, Jonnerby, Jakob, Atchison, Christina, Ashby, Deborah, Barclay, Wendy, Taylor, Graham, Cooke, Graham, Ward, Helen, Darzi, Ara, Riley, Steven, Elliott, Paul, Donnelly, Christl A., Chadeau-Hyam, Marc
Publicado 2022

SARS-CoV-2 variants of concern dominate in Lahore, Pakistan in April 2021

por Sarwar, Muhammad Bilal, Yasir, Muhammad, Alikhan, Nabil-Fareed, Afzal, Nadeem, de Oliveira Martins, Leonardo, Le Viet, Thanh, Trotter, Alexander J., Prosolek, Sophie J., Kay, Gemma L., Foster-Nyarko, Ebenezer, Rudder, Steven, Baker, David J., Muntaha, Sidra Tul, Roman, Muhammad, Webber, Mark A., Shafiq, Almina, Shabbir, Bilquis, Akram, Javed, Page, Andrew J., Jahan, Shah
Publicado 2021

Repurposing an integrated national influenza platform for genomic surveillance of SARS-CoV-2 in Ghana: a molecular epidemiological analysis

por Asante, Ivy Asantewaa, Hsu, Sharon Nienyun, Boatemaa, Linda, Kwasah, Lorreta, Adusei-Poku, Mildred, Odoom, John Kofi, Awuku-Larbi, Yaw, Foulkes, Benjamin H, Oliver-Commey, Joseph, Asiedu, Ernest Konadu, Parker, Matthew D, Mitja, Oriol, Eggo, Rosalind M, de Oliveira-Martins, Leonardo, Asiedu-Bekoe, Franklin, Laryea, Dennis Odai, Kuma-Aboagye, Patrick, Marks, Michael, de Silva, Thushan I, Ampofo, William Kwabena
Publicado 2023

Replacement of the Alpha variant of SARS-CoV-2 by the Delta variant in Lebanon between April and June 2021

por Merhi, Georgi, Trotter, Alexander J., de Oliveira Martins, Leonardo, Koweyes, Jad, Le-Viet, Thanh, Abou Naja, Hala, Al Buaini, Mona, Prosolek, Sophie J., Alikhan, Nabil-Fareed, Lott, Martin, Tohmeh, Tatiana, Badran, Bassam, Jupp, Orla J., Gardner, Sarah, Felgate, Matthew W., Makin, Kate A., Wilkinson, Janine M., Stanley, Rachael, Sesay, Abdul K., Webber, Mark A., Davidson, Rose K., Ghosn, Nada, Pallen, Mark, Hasan, Hamad, Page, Andrew J., Tokajian, Sima
Publicado 2022

CoronaHiT: high-throughput sequencing of SARS-CoV-2 genomes

por Baker, Dave J., Aydin, Alp, Le-Viet, Thanh, Kay, Gemma L., Rudder, Steven, de Oliveira Martins, Leonardo, Tedim, Ana P., Kolyva, Anastasia, Diaz, Maria, Alikhan, Nabil-Fareed, Meadows, Lizzie, Bell, Andrew, Gutierrez, Ana Victoria, Trotter, Alexander J., Thomson, Nicholas M., Gilroy, Rachel, Griffith, Luke, Adriaenssens, Evelien M., Stanley, Rachael, Charles, Ian G., Elumogo, Ngozi, Wain, John, Prakash, Reenesh, Meader, Emma, Mather, Alison E., Webber, Mark A., Dervisevic, Samir, Page, Andrew J., O’Grady, Justin
Publicado 2021

Genomic epidemiology and the role of international and regional travel in the SARS-CoV-2 epidemic in Zimbabwe: a retrospective study of routinely collected surveillance data

por Mashe, Tapfumanei, Takawira, Faustinos Tatenda, de Oliveira Martins, Leonardo, Gudza-Mugabe, Muchaneta, Chirenda, Joconiah, Munyanyi, Manes, Chaibva, Blessmore V, Tarupiwa, Andrew, Gumbo, Hlanai, Juru, Agnes, Nyagupe, Charles, Ruhanya, Vurayai, Phiri, Isaac, Manangazira, Portia, Goredema, Alexander, Danda, Sydney, Chabata, Israel, Jonga, Janet, Munharira, Rutendo, Masunda, Kudzai, Mukeredzi, Innocent, Mangwanya, Douglas, Trotter, Alex, Le Viet, Thanh, Rudder, Steven, Kay, Gemma, Baker, David, Thilliez, Gaetan, Gutierrez, Ana Victoria, O'Grady, Justin, Hove, Maxwell, Mutapuri-Zinyowera, Sekesai, Page, Andrew J, Kingsley, Robert A, Mhlanga, Gibson
Publicado 2021

Large-scale sequencing of SARS-CoV-2 genomes from one region allows detailed epidemiology and enables local outbreak management

por Page, Andrew J., Mather, Alison E., Le-Viet, Thanh, Meader, Emma J., Alikhan, Nabil-Fareed, Kay, Gemma L., de Oliveira Martins, Leonardo, Aydin, Alp, Baker, David J., Trotter, Alexander J., Rudder, Steven, Tedim, Ana P., Kolyva, Anastasia, Stanley, Rachael, Yasir, Muhammad, Diaz, Maria, Potter, Will, Stuart, Claire, Meadows, Lizzie, Bell, Andrew, Gutierrez, Ana Victoria, Thomson, Nicholas M., Adriaenssens, Evelien M., Swingler, Tracey, Gilroy, Rachel A. J., Griffith, Luke, Sethi, Dheeraj K., Aggarwal, Dinesh, Brown, Colin S., Davidson, Rose K., Kingsley, Robert A., Bedford, Luke, Coupland, Lindsay J., Charles, Ian G., Elumogo, Ngozi, Wain, John, Prakash, Reenesh, Webber, Mark A., Smith, S. J. Louise, Chand, Meera, Dervisevic, Samir, O’Grady, Justin
Publicado 2021