Semiautomated glycoproteomics data analysis workflow for maximized glycopeptide identification and reliable quantification

por Lippold, Steffen, de Ru, Arnoud H, Nouta, Jan, van Veelen, Peter A, Palmblad, Magnus, Wuhrer, Manfred, de Haan, Noortje
Publicado 2020

New insights into the type A glycan modification of Clostridioides difficile flagellar protein flagellin C by phosphoproteomics analysis

por Hensbergen, Paul J., de Ru, Arnoud H., Friggen, Annemieke H., Corver, Jeroen, Smits, Wiep Klaas, van Veelen, Peter A.
Publicado 2022

Clostridioides difficile Phosphoproteomics Shows an Expansion of Phosphorylated Proteins in Stationary Growth Phase

por Smits, Wiep Klaas, Mohammed, Yassene, de Ru, Arnoud H., Cordo', Valentina, Friggen, Annemieke H., van Veelen, Peter A., Hensbergen, Paul J.
Publicado 2022

Dominance of an alternative CLIP sequence in the celiac disease associated HLA-DQ2 molecule

por Wiesner, Martina, Stepniak, Dariusz, de Ru, Arnoud H., Moustakis, Antonis K., Drijfhout, Jan W., Papadopoulos, George K., van Veelen, Peter A., Koning, Frits
Publicado 2008

The alphavirus nonstructural protein 2 NTPase induces a host translational shut-off through phosphorylation of eEF2 via cAMP-PKA-eEF2K signaling

por Treffers, Emmely E., Tas, Ali, Scholte, Florine E. M., de Ru, Arnoud H., Snijder, Eric J., van Veelen, Peter A., van Hemert, Martijn J.
Publicado 2023

Ligandomes obtained from different HLA-class II-molecules are homologous for N- and C-terminal residues outside the peptide-binding cleft

por Kampstra, Arieke S.B., van Heemst, Jurgen, Janssen, George M., de Ru, Arnoud H., van Lummel, Menno, van Veelen, Peter A., Toes, René E.M.
Publicado 2019

Oxonium Ion Guided Analysis of Quantitative Proteomics Data Reveals Site-Specific O-Glycosylation of Anterior Gradient Protein 2 (AGR2)

por Pirro, Martina, Mohammed, Yassene, de Ru, Arnoud H., Janssen, George M. C., Tjokrodirijo, Rayman T. N., Madunić, Katarina, Wuhrer, Manfred, van Veelen, Peter A., Hensbergen, Paul J.
Publicado 2021

PTX3 structure determination using a hybrid cryoelectron microscopy and AlphaFold approach offers insights into ligand binding and complement activation

por Noone, Dylan P., Dijkstra, Douwe J., van der Klugt, Teun T., van Veelen, Peter A., de Ru, Arnoud H., Hensbergen, Paul J., Trouw, Leendert A., Sharp, Thomas H.
Publicado 2022

Site-Specific Glycosylation Mapping of Fc Gamma Receptor IIIb from Neutrophils of Individual Healthy Donors

por Wojcik, Iwona, Sénard, Thomas, de Graaf, Erik L., Janssen, George M. C., de Ru, Arnoud H., Mohammed, Yassene, van Veelen, Peter A., Vidarsson, Gestur, Wuhrer, Manfred, Falck, David
Publicado 2020

Retinal Proteomics of a Mouse Model of Dystroglycanopathies Reveals Molecular Alterations in Photoreceptors

por Uribe, Mary Luz, Martín-Nieto, José, Quereda, Cristina, Rubio-Fernández, Marcos, Cruces, Jesús, Janssen, George M. C., de Ru, Arnoud H., van Veelen, Peter A., Hensbergen, Paul J.
Publicado 2021

HSPVdb—the Human Short Peptide Variation Database for improved mass spectrometry-based detection of polymorphic HLA-ligands

por Nijveen, Harm, Kester, Michel G. D., Hassan, Chopie, Viars, Aurélie, de Ru, Arnoud H., de Jager, Machiel, Falkenburg, J. H. Fred, Leunissen, Jack A. M., van Veelen, Peter A.
Publicado 2010

In-Depth Specificity Profiling of Endopeptidases Using Dedicated Mix-and-Split Synthetic Peptide Libraries and Mass Spectrometry

por Claushuis, Bart, Cordfunke, Robert A., de Ru, Arnoud H., Otte, Annemarie, van Leeuwen, Hans C., Klychnikov, Oleg I., van Veelen, Peter A., Corver, Jeroen, Drijfhout, Jan W., Hensbergen, Paul J.
Publicado 2023

N-Glycoproteins Have a Major Role in MGL Binding to Colorectal Cancer Cell Lines: Associations with Overall Proteome Diversity

por Pirro, Martina, Mohammed, Yassene, van Vliet, Sandra J., Rombouts, Yoann, Sciacca, Agnese, de Ru, Arnoud H., Janssen, George M. C., Tjokrodirijo, Rayman T. N., Wuhrer, Manfred, van Veelen, Peter A., Hensbergen, Paul J.
Publicado 2020

Fc gamma receptor IIIb binding of individual antibody proteoforms resolved by affinity chromatography–mass spectrometry

por Lippold, Steffen, Knaupp, Alexander, de Ru, Arnoud H., Tjokrodirijo, Rayman T. N., van Veelen, Peter A., van Puijenbroek, Erwin, de Taeye, Steven W., Reusch, Dietmar, Vidarsson, Gestur, Wuhrer, Manfred, Schlothauer, Tilman, Falck, David
Publicado 2021

Promiscuous Binding of Invariant Chain-Derived CLIP Peptide to Distinct HLA-I Molecules Revealed in Leukemic Cells

por van Luijn, Marvin M., van de Loosdrecht, Arjan A., Lampen, Margit H., van Veelen, Peter A., Zevenbergen, Adri, Kester, Michel G. D., de Ru, Arnoud H., Ossenkoppele, Gert J., van Hall, Thorbald, van Ham, S. Marieke
Publicado 2012

SUMO-activated target traps (SATTs) enable the identification of a comprehensive E3-specific SUMO proteome

por Salas-Lloret, Daniel, Jansen, Nicolette S., Nagamalleswari, Easa, van der Meulen, Coen, Gracheva, Ekaterina, de Ru, Arnoud H., Otte, H. Anne Marie, van Veelen, Peter A., Pichler, Andrea, Goedhart, Joachim, Vertegaal, Alfred C.O., González-Prieto, Román
Publicado 2023

Promiscuity of Peptides Presented in HLA-DP Molecules from Different Immunogenicity Groups Is Associated With T-Cell Cross-Reactivity

por Laghmouchi, Aicha, Kester, Michel G. D., Hoogstraten, Conny, Hageman, Lois, de Klerk, Wendy, Huisman, Wesley, Koster, Eva A. S., de Ru, Arnoud H., van Balen, Peter, Klobuch, Sebastian, van Veelen, Peter A., Falkenburg, J. H. Frederik, Jedema, Inge
Publicado 2022

Healthy cells functionally present TAP-independent SSR1 peptides: implications for selection of clinically relevant antigens

por de Waard, Antonius A., Verkerk, Tamara, Hoefakker, Kelly, van der Steen, Dirk M., Jongsma, Marlieke L.M., Melamed Kadosh, Dganit, Bliss, Sophie, de Ru, Arnoud H., Admon, Arie, van Veelen, Peter A., Griffioen, Marieke, Heemskerk, Mirjam H.M., Spaapen, Robbert M.
Publicado 2021

ST6Gal1 targets the ectodomain of ErbB2 in a site-specific manner and regulates gastric cancer cell sensitivity to trastuzumab

por Duarte, Henrique O., Rodrigues, Joana G., Gomes, Catarina, Hensbergen, Paul J., Ederveen, Agnes L. Hipgrave, de Ru, Arnoud H., Mereiter, Stefan, Polónia, António, Fernandes, Elisabete, Ferreira, José A., van Veelen, Peter A., Santos, Lúcio L., Wuhrer, Manfred, Gomes, Joana, Reis, Celso A.
Publicado 2021

Cellular Validation of a Chemically Improved Inhibitor Identifies Monoubiquitination on OTUB2

por Gan, Jin, de Vries, Jelle, Akkermans, Jimmy J. L. L., Mohammed, Yassene, Tjokrodirijo, Rayman T. N., de Ru, Arnoud H., Kim, Robbert Q., Vargas, David A., Pol, Vito, Fasan, Rudi, van Veelen, Peter A., Neefjes, Jacques, van Dam, Hans, Ovaa, Huib, Sapmaz, Aysegul, Geurink, Paul P.
Publicado 2023