ATTRACT-EM: A New Method for the Computational Assembly of Large Molecular Machines Using Cryo-EM Maps

por de Vries, Sjoerd J., Zacharias, Martin
Publicado 2012

CPORT: A Consensus Interface Predictor and Its Performance in Prediction-Driven Docking with HADDOCK

por de Vries, Sjoerd J., Bonvin, Alexandre M. J. J.
Publicado 2011

Binding Site Identification and Flexible Docking of Single Stranded RNA to Proteins Using a Fragment-Based Approach

por Chauvot de Beauchene, Isaure, de Vries, Sjoerd J., Zacharias, Martin
Publicado 2016

Fragment-based modelling of single stranded RNA bound to RNA recognition motif containing proteins

por de Beauchene, Isaure Chauvot, de Vries, Sjoerd J., Zacharias, Martin
Publicado 2016

SeamDock: An Interactive and Collaborative Online Docking Resource to Assist Small Compound Molecular Docking

por Murail, Samuel, de Vries, Sjoerd J., Rey, Julien, Moroy, Gautier, Tufféry, Pierre
Publicado 2021

The pepATTRACT web server for blind, large-scale peptide–protein docking

por de Vries, Sjoerd J., Rey, Julien, Schindler, Christina E. M., Zacharias, Martin, Tuffery, Pierre
Publicado 2017

DaReUS-Loop: a web server to model multiple loops in homology models

por Karami, Yasaman, Rey, Julien, Postic, Guillaume, Murail, Samuel, Tufféry, Pierre, de Vries, Sjoerd J
Publicado 2019

Rapid Design of Knowledge-Based Scoring Potentials for Enrichment of Near-Native Geometries in Protein-Protein Docking

por Sasse, Alexander, de Vries, Sjoerd J., Schindler, Christina E. M., de Beauchêne, Isaure Chauvot, Zacharias, Martin
Publicado 2017

Building Macromolecular Assemblies by Information-driven Docking: INTRODUCING THE HADDOCK MULTIBODY DOCKING SERVER

por Karaca, Ezgi, Melquiond, Adrien S. J., de Vries, Sjoerd J., Kastritis, Panagiotis L., Bonvin, Alexandre M. J. J.
Publicado 2010

MTMDAT-HADDOCK: High-throughput, protein complex structure modeling based on limited proteolysis and mass spectrometry

por Hennig, Janosch, de Vries, Sjoerd J, Hennig, Klaus DM, Randles, Leah, Walters, Kylie J, Sunnerhagen, Maria, Bonvin, Alexandre MJJ
Publicado 2012

Dynamic Control of Selectivity in the Ubiquitination Pathway Revealed by an ASP to GLU Substitution in an Intra-Molecular Salt-Bridge Network

por van Wijk, Sjoerd J. L., Melquiond, Adrien S. J., de Vries, Sjoerd J., Timmers, H. Th. Marc, Bonvin, Alexandre M. J. J.
Publicado 2012

Higher-level cognitive functions in Dutch elite and sub-elite table tennis players

por Elferink-Gemser, Marije T., Faber, Irene R., Visscher, Chris, Hung, Tsung-Min, de Vries, Sjoerd J., Nijhuis-Van der Sanden, Maria W. G.
Publicado 2018

A comprehensive framework of E2–RING E3 interactions of the human ubiquitin–proteasome system

por van Wijk, Sjoerd J L, de Vries, Sjoerd J, Kemmeren, Patrick, Huang, Anding, Boelens, Rolf, Bonvin, Alexandre M J J, Timmers, H Th Marc
Publicado 2009

A comprehensive framework of E2–RING E3 interactions of the human ubiquitin–proteasome system

por van Wijk, Sjoerd J L, de Vries, Sjoerd J, Kemmeren, Patrick, Huang, Anding, Boelens, Rolf, Bonvin, Alexandre M J J, Timmers, H Th Marc
Publicado 2009