Introducing the PRIDE Archive RESTful web services

por Reisinger, Florian, del-Toro, Noemi, Ternent, Tobias, Hermjakob, Henning, Vizcaíno, Juan Antonio
Publicado 2015

IntAct App: a Cytoscape application for molecular interaction network visualization and analysis

por Ragueneau, Eliot, Shrivastava, Anjali, Morris, John H, del-Toro, Noemi, Hermjakob, Henning, Porras, Pablo
Publicado 2021

ms-data-core-api: an open-source, metadata-oriented library for computational proteomics

por Perez-Riverol, Yasset, Uszkoreit, Julian, Sanchez, Aniel, Ternent, Tobias, del Toro, Noemi, Hermjakob, Henning, Vizcaíno, Juan Antonio, Wang, Rui
Publicado 2015

Analysing the yeast complexome—the Complex Portal rising to the challenge

por Meldal, Birgit H M, Pons, Carles, Perfetto, Livia, Del-Toro, Noemi, Wong, Edith, Aloy, Patrick, Hermjakob, Henning, Orchard, Sandra, Porras, Pablo
Publicado 2021

A new reference implementation of the PSICQUIC web service

por del-Toro, Noemi, Dumousseau, Marine, Orchard, Sandra, Jimenez, Rafael C., Galeota, Eugenia, Launay, Guillaume, Goll, Johannes, Breuer, Karin, Ono, Keiichiro, Salwinski, Lukasz, Hermjakob, Henning
Publicado 2013

Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets

por Griss, Johannes, Perez-Riverol, Yasset, Lewis, Steve, Tabb, David L., Dianes, José A., del-Toro, Noemi, Rurik, Marc, Walzer, Mathias W., Kohlbacher, Oliver, Hermjakob, Henning, Wang, Rui, Vizcaíno, Juan Antonio
Publicado 2016

2016 update of the PRIDE database and its related tools

por Vizcaíno, Juan Antonio, Csordas, Attila, del-Toro, Noemi, Dianes, José A., Griss, Johannes, Lavidas, Ilias, Mayer, Gerhard, Perez-Riverol, Yasset, Reisinger, Florian, Ternent, Tobias, Xu, Qing-Wei, Wang, Rui, Hermjakob, Henning
Publicado 2016

2016 update of the PRIDE database and its related tools

por Vizcaíno, Juan Antonio, Csordas, Attila, del-Toro, Noemi, Dianes, José A., Griss, Johannes, Lavidas, Ilias, Mayer, Gerhard, Perez-Riverol, Yasset, Reisinger, Florian, Ternent, Tobias, Xu, Qing-Wei, Wang, Rui, Hermjakob, Henning
Publicado 2016

PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets

por Perez-Riverol, Yasset, Xu, Qing-Wei, Wang, Rui, Uszkoreit, Julian, Griss, Johannes, Sanchez, Aniel, Reisinger, Florian, Csordas, Attila, Ternent, Tobias, del-Toro, Noemi, Dianes, Jose A., Eisenacher, Martin, Hermjakob, Henning, Vizcaíno, Juan Antonio
Publicado 2016

Detection of Missing Proteins Using the PRIDE Database as a Source of Mass Spectrometry Evidence

por Garin-Muga, Alba, Odriozola, Leticia, Martínez-Val, Ana, del Toro, Noemí, Martínez, Rocío, Molina, Manuela, Cantero, Laura, Rivera, Rocío, Garrido, Nicolás, Dominguez, Francisco, Sanchez del Pino, Manuel M., Vizcaíno, Juan Antonio, Corrales, Fernando J., Segura, Victor
Publicado 2016

Network expansion of genetic associations defines a pleiotropy map of human cell biology

por Barrio-Hernandez, Inigo, Schwartzentruber, Jeremy, Shrivastava, Anjali, del-Toro, Noemi, Gonzalez, Asier, Zhang, Qian, Mountjoy, Edward, Suveges, Daniel, Ochoa, David, Ghoussaini, Maya, Bradley, Glyn, Hermjakob, Henning, Orchard, Sandra, Dunham, Ian, Anderson, Carl A., Porras, Pablo, Beltrao, Pedro
Publicado 2023

Complex Portal 2018: extended content and enhanced visualization tools for macromolecular complexes

por Meldal, Birgit H M, Bye-A-Jee, Hema, Gajdoš, Lukáš, Hammerová, Zuzana, Horáčková, Aneta, Melicher, Filip, Perfetto, Livia, Pokorný, Daniel, Lopez, Milagros Rodriguez, Türková, Alžběta, Wong, Edith D, Xie, Zengyan, Casanova, Elisabeth Barrera, del-Toro, Noemi, Koch, Maximilian, Porras, Pablo, Hermjakob, Henning, Orchard, Sandra
Publicado 2019

Complex Portal 2022: new curation frontiers

por Meldal, Birgit H M, Perfetto, Livia, Combe, Colin, Lubiana, Tiago, Ferreira Cavalcante, João Vitor, Bye-A-Jee, Hema, Waagmeester, Andra, del-Toro, Noemi, Shrivastava, Anjali, Barrera, Elisabeth, Wong, Edith, Mlecnik, Bernhard, Bindea, Gabriela, Panneerselvam, Kalpana, Willighagen, Egon, Rappsilber, Juri, Porras, Pablo, Hermjakob, Henning, Orchard, Sandra
Publicado 2021

The mzTab Data Exchange Format: Communicating Mass-spectrometry-based Proteomics and Metabolomics Experimental Results to a Wider Audience

por Griss, Johannes, Jones, Andrew R., Sachsenberg, Timo, Walzer, Mathias, Gatto, Laurent, Hartler, Jürgen, Thallinger, Gerhard G., Salek, Reza M., Steinbeck, Christoph, Neuhauser, Nadin, Cox, Jürgen, Neumann, Steffen, Fan, Jun, Reisinger, Florian, Xu, Qing-Wei, del Toro, Noemi, Pérez-Riverol, Yasset, Ghali, Fawaz, Bandeira, Nuno, Xenarios, Ioannis, Kohlbacher, Oliver, Vizcaíno, Juan Antonio, Hermjakob, Henning
Publicado 2014

Towards a unified open access dataset of molecular interactions

por Porras, Pablo, Barrera, Elisabet, Bridge, Alan, del-Toro, Noemi, Cesareni, Gianni, Duesbury, Margaret, Hermjakob, Henning, Iannuccelli, Marta, Jurisica, Igor, Kotlyar, Max, Licata, Luana, Lovering, Ruth C., Lynn, David J., Meldal, Birgit, Nanduri, Bindu, Paneerselvam, Kalpana, Panni, Simona, Pastrello, Chiara, Pellegrini, Matteo, Perfetto, Livia, Rahimzadeh, Negin, Ratan, Prashansa, Ricard-Blum, Sylvie, Salwinski, Lukasz, Shirodkar, Gautam, Shrivastava, Anjalia, Orchard, Sandra
Publicado 2020

The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST)

por Touré, Vasundra, Vercruysse, Steven, Acencio, Marcio Luis, Lovering, Ruth C, Orchard, Sandra, Bradley, Glyn, Casals-Casas, Cristina, Chaouiya, Claudine, del-Toro, Noemi, Flobak, Åsmund, Gaudet, Pascale, Hermjakob, Henning, Hoyt, Charles Tapley, Licata, Luana, Lægreid, Astrid, Mungall, Christopher J, Niknejad, Anne, Panni, Simona, Perfetto, Livia, Porras, Pablo, Pratt, Dexter, Saez-Rodriguez, Julio, Thieffry, Denis, Thomas, Paul D, Türei, Dénes, Kuiper, Martin
Publicado 2020

The IntAct database: efficient access to fine-grained molecular interaction data

por del Toro, Noemi, Shrivastava, Anjali, Ragueneau, Eliot, Meldal, Birgit, Combe, Colin, Barrera, Elisabet, Perfetto, Livia, How, Karyn, Ratan, Prashansa, Shirodkar, Gautam, Lu, Odilia, Mészáros, Bálint, Watkins, Xavier, Pundir, Sangya, Licata, Luana, Iannuccelli, Marta, Pellegrini, Matteo, Martin, Maria Jesus, Panni, Simona, Duesbury, Margaret, Vallet, Sylvain D, Rappsilber, Juri, Ricard-Blum, Sylvie, Cesareni, Gianni, Salwinski, Lukasz, Orchard, Sandra, Porras, Pablo, Panneerselvam, Kalpana, Hermjakob, Henning
Publicado 2021

The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases

por Orchard, Sandra, Ammari, Mais, Aranda, Bruno, Breuza, Lionel, Briganti, Leonardo, Broackes-Carter, Fiona, Campbell, Nancy H., Chavali, Gayatri, Chen, Carol, del-Toro, Noemi, Duesbury, Margaret, Dumousseau, Marine, Galeota, Eugenia, Hinz, Ursula, Iannuccelli, Marta, Jagannathan, Sruthi, Jimenez, Rafael, Khadake, Jyoti, Lagreid, Astrid, Licata, Luana, Lovering, Ruth C., Meldal, Birgit, Melidoni, Anna N., Milagros, Mila, Peluso, Daniele, Perfetto, Livia, Porras, Pablo, Raghunath, Arathi, Ricard-Blum, Sylvie, Roechert, Bernd, Stutz, Andre, Tognolli, Michael, van Roey, Kim, Cesareni, Gianni, Hermjakob, Henning
Publicado 2014