The what, where, how and why of gene ontology—a primer for bioinformaticians

por du Plessis, Louis, Škunca, Nives, Dessimoz, Christophe
Publicado 2011

Impact of the tree prior on estimating clock rates during epidemic outbreaks

por Möller, Simon, du Plessis, Louis, Stadler, Tanja
Publicado 2018

How Good Are Statistical Models at Approximating Complex Fitness Landscapes?

por du Plessis, Louis, Leventhal, Gabriel E., Bonhoeffer, Sebastian
Publicado 2016

Jointly Inferring the Dynamics of Population Size and Sampling Intensity from Molecular Sequences

por Parag, Kris V, du Plessis, Louis, Pybus, Oliver G
Publicado 2020

Insights into the Early Epidemic Spread of Ebola in Sierra Leone Provided by Viral Sequence Data

por Stadler, Tanja, Kühnert, Denise, Rasmussen, David A., du Plessis, Louis
Publicado 2014

A computationally tractable birth-death model that combines phylogenetic and epidemiological data

por Zarebski, Alexander Eugene, du Plessis, Louis, Parag, Kris Varun, Pybus, Oliver George
Publicado 2022

Purifying Selection Determines the Short-Term Time Dependency of Evolutionary Rates in SARS-CoV-2 and pH1N1 Influenza

por Ghafari, Mahan, du Plessis, Louis, Raghwani, Jayna, Bhatt, Samir, Xu, Bo, Pybus, Oliver G, Katzourakis, Aris
Publicado 2022

The genomes of Crithidia bombi and C. expoeki, common parasites of bumblebees

por Schmid-Hempel, Paul, Aebi, Markus, Barribeau, Seth, Kitajima, Toshihiko, du Plessis, Louis, Schmid-Hempel, Regula, Zoller, Stefan
Publicado 2018

A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology

por Rambaut, Andrew, Holmes, Edward C., O’Toole, Áine, Hill, Verity, McCrone, John T., Ruis, Christopher, du Plessis, Louis, Pybus, Oliver G.
Publicado 2020

Addendum: A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology

por Rambaut, Andrew, Holmes, Edward C., O’Toole, Áine, Hill, Verity, McCrone, John T., Ruis, Christopher, du Plessis, Louis, Pybus, Oliver G.
Publicado 2021

The Changing Epidemiological Profile of HIV-1 Subtype B Epidemic in Ukraine

por Vasylyeva, Tetyana I., Liulchuk, Mariia, du Plessis, Louis, Fearnhill, Esther, Zadorozhna, Victoriia, Babii, Nataliia, Scherbinska, Alla, Novitsky, Vladimir, Pybus, Oliver G., Faria, Nuno R.
Publicado 2019

Tracing the Impact of Public Health Interventions on HIV-1 Transmission in Portugal Using Molecular Epidemiology

por Vasylyeva, Tetyana I, du Plessis, Louis, Pineda-Peña, Andrea C, Kühnert, Denise, Lemey, Philippe, Vandamme, Anne-Mieke, Gomes, Perpétua, Camacho, Ricardo J, Pybus, Oliver G, Abecasis, Ana B, Faria, Nuno R
Publicado 2019

Genomic Epidemiology of Early SARS-CoV-2 Transmission Dynamics, Gujarat, India

por Raghwani, Jayna, du Plessis, Louis, McCrone, John T., Hill, Sarah C., Parag, Kris V., Thézé, Julien, Kumar, Dinesh, Puvar, Apurva, Pandit, Ramesh, Pybus, Oliver G., Fournié, Guillaume, Joshi, Madhvi, Joshi, Chaitanya
Publicado 2022

Clinical, immunological and virological characterization of COVID-19 patients that test re-positive for SARS-CoV-2 by RT-PCR

por Lu, Jing, Peng, Jinju, Xiong, Qianling, Liu, Zhe, Lin, Huifang, Tan, Xiaohua, Kang, Min, Yuan, Runyu, Zeng, Lilian, Zhou, Pingping, Liang, Chumin, Yi, Lina, du Plessis, Louis, Song, Tie, Ma, Wenjun, Sun, Jiufeng, Pybus, Oliver G, Ke, Changwen
Publicado 2020

Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework

por Dellicour, Simon, Lequime, Sebastian, Vrancken, Bram, Gill, Mandev S., Bastide, Paul, Gangavarapu, Karthik, Matteson, Nathaniel L., Tan, Yi, du Plessis, Louis, Fisher, Alexander A., Nelson, Martha I., Gilbert, Marius, Suchard, Marc A., Andersen, Kristian G., Grubaugh, Nathan D., Pybus, Oliver G., Lemey, Philippe
Publicado 2020

The effect of human mobility and control measures on the COVID-19 epidemic in China

por Kraemer, Moritz U. G., Yang, Chia-Hung, Gutierrez, Bernardo, Wu, Chieh-Hsi, Klein, Brennan, Pigott, David M., du Plessis, Louis, Faria, Nuno R., Li, Ruoran, Hanage, William P., Brownstein, John S., Layan, Maylis, Vespignani, Alessandro, Tian, Huaiyu, Dye, Christopher, Pybus, Oliver G., Scarpino, Samuel V.
Publicado 2020

The effect of human mobility and control measures on the COVID-19 epidemic in China

por Kraemer, Moritz U.G., Yang, Chia-Hung, Gutierrez, Bernardo, Wu, Chieh-Hsi, Klein, Brennan, Pigott, David M., du Plessis, Louis, Faria, Nuno R., Li, Ruoran, Hanage, William P., Brownstein, John S., Layan, Maylis, Vespignani, Alessandro, Tian, Huaiyu, Dye, Christopher, Cauchemez, Simon, Pybus, Oliver G., Scarpino, Samuel V.
Publicado 2020

Assignment of epidemiological lineages in an emerging pandemic using the pangolin tool

por O’Toole, Áine, Scher, Emily, Underwood, Anthony, Jackson, Ben, Hill, Verity, McCrone, John T, Colquhoun, Rachel, Ruis, Chris, Abu-Dahab, Khalil, Taylor, Ben, Yeats, Corin, du Plessis, Louis, Maloney, Daniel, Medd, Nathan, Attwood, Stephen W, Aanensen, David M, Holmes, Edward C, Pybus, Oliver G, Rambaut, Andrew
Publicado 2021

Genomic epidemiology of Mycobacterium bovis infection in sympatric badger and cattle populations in Northern Ireland

por Akhmetova, Assel, Guerrero, Jimena, McAdam, Paul, Salvador, Liliana C. M., Crispell, Joseph, Lavery, John, Presho, Eleanor, Kao, Rowland R., Biek, Roman, Menzies, Fraser, Trimble, Nigel, Harwood, Roland, Pepler, P. Theo, Oravcova, Katarina, Graham, Jordon, Skuce, Robin, du Plessis, Louis, Thompson, Suzan, Wright, Lorraine, Byrne, Andrew W., Allen, Adrian R.
Publicado 2023

A depauperate immune repertoire precedes evolution of sociality in bees

por Barribeau, Seth M, Sadd, Ben M, du Plessis, Louis, Brown, Mark JF, Buechel, Severine D, Cappelle, Kaat, Carolan, James C, Christiaens, Olivier, Colgan, Thomas J, Erler, Silvio, Evans, Jay, Helbing, Sophie, Karaus, Elke, Lattorff, H Michael G, Marxer, Monika, Meeus, Ivan, Näpflin, Kathrin, Niu, Jinzhi, Schmid-Hempel, Regula, Smagghe, Guy, Waterhouse, Robert M, Yu, Na, Zdobnov, Evgeny M, Schmid-Hempel, Paul
Publicado 2015